Variant report

Variant	rs1490084
Chromosome Location	chr11:46222763-46222764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12283653	0.90[JPT][hapmap]
rs4482000	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4620693	0.91[JPT][hapmap]
rs7943379	0.81[JPT][hapmap]
rs7949325	0.87[ASN][1000 genomes]
rs902282	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46222000-46223000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:46222200-46222800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:46222200-46222800	Enhancers	HSMM	muscle
4	chr11:46222200-46223000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
5	chr11:46222200-46223000	Enhancers	NHEK	skin
6	chr11:46222200-46223000	Bivalent Enhancer	Osteobl	bone
7	chr11:46222200-46223200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:46222400-46222800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:46222400-46223000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:46222400-46223200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:46222600-46222800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:46222600-46222800	Flanking Active TSS	NHDF-Ad	bronchial
13	chr11:46222600-46223000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:46222600-46223000	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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