Variant report

Variant	rs149045053
Chromosome Location	chr5:145214191-145214192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145213194..145215106-chr5:145826697..145828661,2	K562	blood:
2	chr5:145213219..145215164-chr5:145314647..145317040,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156463	Chromatin interaction
ENSG00000113649	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329004	chr5:145213984-145216532	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145172800-145214200	Weak transcription	Right Ventricle	heart
2	chr5:145201400-145214200	Weak transcription	Lung	lung
3	chr5:145207200-145214200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:145209800-145214200	Weak transcription	Small Intestine	intestine
5	chr5:145209800-145214200	Weak transcription	Hela-S3	cervix
6	chr5:145210600-145214400	Weak transcription	Primary T cells from cord blood	blood
7	chr5:145210800-145214200	Weak transcription	Liver	Liver
8	chr5:145211000-145214200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:145211000-145214200	Weak transcription	Left Ventricle	heart
10	chr5:145211000-145214200	Weak transcription	Right Atrium	heart
11	chr5:145211000-145214400	Weak transcription	HSMMtube	muscle
12	chr5:145212400-145214200	Weak transcription	Gastric	stomach
13	chr5:145212800-145215400	Active TSS	Colonic Mucosa	Colon
14	chr5:145212800-145216000	Active TSS	Rectal Smooth Muscle	rectum
15	chr5:145213000-145215400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr5:145213200-145214200	Weak transcription	Aorta	Aorta
17	chr5:145213200-145215600	Active TSS	NHLF	lung
18	chr5:145213400-145214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:145213400-145214200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:145213400-145214200	Enhancers	Brain Anterior Caudate	brain
21	chr5:145213400-145214200	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:145213400-145214200	Enhancers	Colon Smooth Muscle	Colon
23	chr5:145213400-145214200	Enhancers	Fetal Brain Male	brain
24	chr5:145213400-145214200	Enhancers	Fetal Heart	heart
25	chr5:145213400-145214200	Weak transcription	Pancreas	Pancrea
26	chr5:145213400-145214200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr5:145213400-145214200	Flanking Active TSS	HepG2	liver
28	chr5:145213400-145214800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:145213400-145215400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:145213400-145215400	Active TSS	Fetal Intestine Large	intestine
31	chr5:145213400-145215400	Active TSS	Fetal Intestine Small	intestine
32	chr5:145213600-145214200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr5:145213600-145214200	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr5:145213600-145214200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr5:145213600-145214200	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr5:145213800-145214200	Enhancers	Primary B cells from peripheral blood	blood
37	chr5:145213800-145214200	Enhancers	Primary hematopoietic stem cells	blood
38	chr5:145213800-145214200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:145213800-145214200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr5:145213800-145214600	Flanking Active TSS	HUVEC	blood vessel
41	chr5:145213800-145214800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:145214000-145214200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr5:145214000-145214200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr5:145214000-145214200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr5:145214000-145214200	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr5:145214000-145214200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:145214000-145214200	Enhancers	Fetal Kidney	kidney
48	chr5:145214000-145214200	Enhancers	Fetal Muscle Leg	muscle
49	chr5:145214000-145214200	Flanking Active TSS	Fetal Stomach	stomach
50	chr5:145214000-145214200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links