Variant report

Variant	rs1490489
Chromosome Location	chr6:26641588-26641589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26639612..26641880-chr6:26658088..26660144,2	MCF-7	breast:
2	chr6:26641377..26644016-chr6:26648888..26650401,2	K562	blood:
3	chr6:26640152..26642957-chr6:26643497..26647003,3	K562	blood:

Variant related genes	Relation type
ENSG00000181315	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2393654	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26633000-26658000	Weak transcription	Fetal Brain Male	brain
2	chr6:26636400-26645800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:26636800-26645800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr6:26637600-26645800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:26638000-26645200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:26638200-26641800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:26638400-26643600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:26638400-26644800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:26638400-26646800	ZNF genes & repeats	Liver	Liver
10	chr6:26638800-26641600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
11	chr6:26638800-26641600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:26638800-26641800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:26638800-26642600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr6:26638800-26644400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
15	chr6:26638800-26644800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:26638800-26645400	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr6:26638800-26645600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:26638800-26646600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:26638800-26646800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:26638800-26646800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:26639000-26641800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
22	chr6:26639000-26641800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:26639000-26641800	ZNF genes & repeats	A549	lung
24	chr6:26639000-26642200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
25	chr6:26639000-26643400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:26639000-26643800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:26639000-26644200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:26639000-26644200	ZNF genes & repeats	NHEK	skin
29	chr6:26639000-26644600	Strong transcription	Placenta	Placenta
30	chr6:26639000-26644600	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr6:26639000-26644800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr6:26639000-26644800	Strong transcription	Dnd41	blood
33	chr6:26639000-26645000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr6:26639000-26645000	ZNF genes & repeats	HMEC	breast
35	chr6:26639000-26645200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
36	chr6:26639000-26645600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr6:26639000-26645600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:26639000-26645800	ZNF genes & repeats	GM12878-XiMat	blood
39	chr6:26639000-26646600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:26639000-26651800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:26639200-26641600	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr6:26639200-26641800	ZNF genes & repeats	Osteobl	bone
43	chr6:26639200-26643200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:26639200-26643200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
45	chr6:26639200-26643600	Strong transcription	Rectal Smooth Muscle	rectum
46	chr6:26639200-26644800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:26639200-26644800	ZNF genes & repeats	NHDF-Ad	bronchial
48	chr6:26639200-26645600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:26639400-26644600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:26639600-26641600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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