Variant report

Variant	rs1490513
Chromosome Location	chr4:119871977-119871978
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11098466	0.96[AFR][1000 genomes]
rs4834718	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868600-119872200	Weak transcription	Fetal Heart	heart
2	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
3	chr4:119870000-119874400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:119870200-119872200	Weak transcription	Aorta	Aorta
5	chr4:119870200-119878800	Weak transcription	Small Intestine	intestine
6	chr4:119871400-119872600	Enhancers	Left Ventricle	heart
7	chr4:119871400-119872600	Enhancers	Right Ventricle	heart
8	chr4:119871400-119872600	Enhancers	Spleen	Spleen
9	chr4:119871400-119872800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr4:119871400-119872800	Enhancers	Ovary	ovary
11	chr4:119871400-119872800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:119871400-119873200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr4:119871400-119873200	Enhancers	Stomach Smooth Muscle	stomach
14	chr4:119871400-119873600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:119871600-119872600	Enhancers	Rectal Smooth Muscle	rectum
16	chr4:119871600-119873000	Enhancers	Colon Smooth Muscle	Colon
17	chr4:119871600-119873400	Enhancers	Right Atrium	heart
18	chr4:119871800-119872400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:119871800-119874400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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