Variant report

Variant	rs1490828
Chromosome Location	chr5:107004210-107004211
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:107000146..107001878-chr5:107002234..107005030,2	K562	blood:
2	chr5:107002898..107004805-chr5:107006650..107008856,2	MCF-7	breast:
3	chr5:107003897..107004498-chr5:107016319..107016851,2	MCF-7	breast:
4	chr5:106907249..106908833-chr5:107002242..107004376,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13170272	0.93[ASN][1000 genomes]
rs4957705	0.93[ASN][1000 genomes]
rs66947683	0.91[ASN][1000 genomes]
rs967270	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106997400-107004600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:107000000-107006800	Active TSS	GM12878-XiMat	blood
3	chr5:107001800-107004400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:107002200-107005400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107002400-107009600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:107002400-107009800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr5:107003000-107009600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:107003000-107009600	Active TSS	A549	lung
9	chr5:107003200-107006400	Bivalent/Poised TSS	Fetal Brain Female	brain
10	chr5:107003200-107009600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:107003800-107004400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:107003800-107004400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:107003800-107004400	Enhancers	Stomach Mucosa	stomach
14	chr5:107003800-107004600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr5:107003800-107004600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
16	chr5:107003800-107004600	Flanking Active TSS	NHEK	skin
17	chr5:107003800-107004800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
18	chr5:107003800-107005400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr5:107003800-107006000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:107003800-107006200	Active TSS	Right Ventricle	heart
21	chr5:107003800-107009600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:107003800-107009600	Active TSS	NHDF-Ad	bronchial
23	chr5:107004000-107004400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr5:107004000-107004400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr5:107004000-107004600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr5:107004000-107004600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
27	chr5:107004000-107004600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr5:107004000-107004800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:107004000-107004800	Flanking Active TSS	Hela-S3	cervix
30	chr5:107004000-107005000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
31	chr5:107004000-107005200	Active TSS	Fetal Stomach	stomach
32	chr5:107004000-107005200	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr5:107004000-107005800	Active TSS	Brain Cingulate Gyrus	brain
34	chr5:107004000-107008600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:107004000-107008600	Active TSS	HSMM	muscle
36	chr5:107004000-107009000	Active TSS	Left Ventricle	heart
37	chr5:107004000-107009400	Active TSS	Placenta Amnion	Placenta Amnion
38	chr5:107004000-107009600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:107004000-107009600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr5:107004000-107009600	Active TSS	Aorta	Aorta
41	chr5:107004000-107009600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
42	chr5:107004000-107009600	Active TSS	Right Atrium	heart
43	chr5:107004200-107004400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr5:107004200-107004400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
45	chr5:107004200-107004400	Active TSS	Fetal Lung	lung
46	chr5:107004200-107004400	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr5:107004200-107004600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr5:107004200-107004600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr5:107004200-107004600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr5:107004200-107004600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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