Variant report

Variant	rs149099487
Chromosome Location	chr14:65706822-65706823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65696604..65698657-chr14:65706204..65708336,3	K562	blood:
2	chr14:65703192..65707325-chr14:65876761..65880324,6	MCF-7	breast:
3	chr14:65702798..65707565-chr14:65719899..65724349,7	MCF-7	breast:
4	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
5	chr14:65703266..65707350-chr14:65709369..65712516,3	K562	blood:
6	chr14:65703752..65707201-chr14:65707603..65710596,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564934	chr14:65706758-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65697400-65710600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:65699000-65708000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:65701200-65707000	Enhancers	Placenta	Placenta
5	chr14:65703000-65707000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:65703000-65707000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:65703000-65707000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:65703200-65707000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:65703200-65707000	Enhancers	NHDF-Ad	bronchial
10	chr14:65703200-65708600	Enhancers	Fetal Intestine Large	intestine
11	chr14:65703400-65707000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:65703400-65711800	Enhancers	Fetal Intestine Small	intestine
13	chr14:65703600-65707000	Enhancers	Brain Anterior Caudate	brain
14	chr14:65703600-65708400	Enhancers	Brain Substantia Nigra	brain
15	chr14:65704000-65707200	Enhancers	HUVEC	blood vessel
16	chr14:65704400-65707000	Enhancers	Colonic Mucosa	Colon
17	chr14:65704600-65707000	Enhancers	Brain Hippocampus Middle	brain
18	chr14:65704600-65707000	Flanking Active TSS	HepG2	liver
19	chr14:65704800-65710400	Weak transcription	Small Intestine	intestine
20	chr14:65705000-65710400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:65705000-65710600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:65705800-65707000	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:65705800-65707000	Enhancers	Right Ventricle	heart
24	chr14:65705800-65707000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr14:65706000-65707000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:65706000-65710600	Weak transcription	NHEK	skin
27	chr14:65706400-65707000	Enhancers	Adipose Nuclei	Adipose
28	chr14:65706400-65707000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:65706400-65707000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr14:65706400-65707000	Enhancers	Stomach Mucosa	stomach
31	chr14:65706400-65709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:65706400-65710000	Weak transcription	Gastric	stomach
33	chr14:65706400-65710000	Weak transcription	K562	blood
34	chr14:65706600-65707000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:65706600-65707000	Enhancers	Duodenum Mucosa	Duodenum
36	chr14:65706600-65707000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr14:65706600-65710400	Weak transcription	Pancreas	Pancrea
38	chr14:65706600-65710400	Weak transcription	HMEC	breast
39	chr14:65706600-65710400	Weak transcription	HSMM	muscle
40	chr14:65706600-65710600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
42	chr14:65706800-65708200	Weak transcription	A549	lung
43	chr14:65706800-65709200	Weak transcription	NH-A	brain
44	chr14:65706800-65709800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:65706800-65709800	Weak transcription	NHLF	lung
46	chr14:65706800-65710400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr14:65706800-65710600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:65706800-65710600	Weak transcription	Osteobl	bone
49	chr14:65706800-65711000	Weak transcription	Hela-S3	cervix
50	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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