Variant report

Variant	rs149110
Chromosome Location	chr5:16701717-16701718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16693261..16695591-chr5:16699683..16702377,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11955561	1.00[EUR][1000 genomes]
rs253334	1.00[MEX][hapmap]
rs256928	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs256937	1.00[EUR][1000 genomes]
rs257048	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2625196	1.00[MEX][hapmap]
rs26740	1.00[CEU][hapmap]
rs28526319	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv4737	chr5:16681166-16707357	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16663000-16712400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16663800-16702400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:16663800-16713400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:16664000-16702000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:16664000-16702200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:16664000-16702400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:16664200-16702200	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:16673800-16713400	Weak transcription	Psoas Muscle	Psoas
9	chr5:16675800-16713600	Weak transcription	Left Ventricle	heart
10	chr5:16677800-16706000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:16681600-16713200	Weak transcription	Small Intestine	intestine
12	chr5:16682400-16736000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:16683800-16707200	Weak transcription	Liver	Liver
14	chr5:16686000-16708400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:16688000-16711600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:16688400-16711400	Strong transcription	Fetal Lung	lung
17	chr5:16689800-16710000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:16690200-16713200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr5:16690400-16707400	Weak transcription	Hela-S3	cervix
20	chr5:16692000-16702000	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr5:16695000-16710600	Weak transcription	Stomach Mucosa	stomach
22	chr5:16695200-16703000	Weak transcription	Fetal Brain Male	brain
23	chr5:16696400-16703000	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:16696600-16703000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:16696600-16705000	Strong transcription	Fetal Stomach	stomach
26	chr5:16697000-16702600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:16697200-16702200	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr5:16697200-16705200	Strong transcription	NHEK	skin
29	chr5:16697200-16711600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:16697400-16705600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:16697400-16711200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr5:16697400-16711400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:16697800-16702400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:16697800-16702800	Strong transcription	Fetal Brain Female	brain
35	chr5:16697800-16705000	Strong transcription	Fetal Muscle Leg	muscle
36	chr5:16697800-16711400	Strong transcription	HMEC	breast
37	chr5:16698000-16702600	Strong transcription	Pancreas	Pancrea
38	chr5:16698000-16711400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:16698000-16711400	Strong transcription	Osteobl	bone
40	chr5:16698200-16701800	Strong transcription	Brain Germinal Matrix	brain
41	chr5:16698200-16704800	Strong transcription	Gastric	stomach
42	chr5:16698200-16711400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr5:16698400-16707400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:16698600-16703800	Strong transcription	HepG2	liver
45	chr5:16698800-16703800	Strong transcription	NH-A	brain
46	chr5:16699000-16702400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:16699000-16702600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:16699000-16703400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:16699000-16705200	Strong transcription	A549	lung
50	chr5:16699000-16706200	Strong transcription	HSMMtube	muscle

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