Variant report

Variant	rs149160
Chromosome Location	chr1:160585554-160585555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs164278	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs164279	1.00[AFR][1000 genomes]
rs164281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2031400	1.00[AMR][1000 genomes]
rs2474927	0.89[AFR][1000 genomes]
rs487365	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv831714	chr1:160581168-160776809	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160576200-160591400	Weak transcription	Spleen	Spleen
2	chr1:160576800-160591400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:160577000-160590800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:160578000-160587400	Strong transcription	Primary B cells from peripheral blood	blood
5	chr1:160579000-160589400	Strong transcription	GM12878-XiMat	blood
6	chr1:160579800-160593200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:160582200-160591800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:160584200-160585600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:160584400-160585800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:160584400-160589800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:160584400-160594600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:160584600-160587600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:160584800-160587400	Strong transcription	Fetal Thymus	thymus
14	chr1:160584800-160591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:160585000-160586200	Strong transcription	Primary T cells from cord blood	blood
16	chr1:160585200-160585800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:160585200-160586600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:160585200-160587600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr1:160585200-160592400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr1:160585400-160585600	Enhancers	K562	blood
21	chr1:160585400-160585800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr1:160585400-160586000	Strong transcription	Primary B cells from cord blood	blood
23	chr1:160585400-160586000	Genic enhancers	Thymus	Thymus
24	chr1:160585400-160586600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:160585400-160589800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood

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