The 2.0 version of rSNPBase

Variant report

Variant rs149163100
Chromosome Location chr5:107197547-107197548
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:107189000-107204000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr5:107189000-107212200 Weak transcription Fetal Brain Male brain
3 chr5:107194000-107219000 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr5:107195200-107214800 Weak transcription Primary B cells from peripheral blood blood
5 chr5:107195400-107204800 Weak transcription Brain Anterior Caudate brain
6 chr5:107195400-107205000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr5:107195400-107207600 Weak transcription Spleen Spleen
8 chr5:107195400-107208600 Weak transcription Brain Hippocampus Middle brain
9 chr5:107195400-107211600 Weak transcription Aorta Aorta
10 chr5:107195400-107214200 Weak transcription Primary B cells from cord blood blood
11 chr5:107195400-107215000 Weak transcription Primary T cells fromperipheralblood blood
12 chr5:107195400-107215000 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr5:107195400-107217800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr5:107195400-107220000 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr5:107195400-107223200 Weak transcription Left Ventricle heart
16 chr5:107195600-107204600 Weak transcription Fetal Stomach stomach
17 chr5:107195800-107214400 Weak transcription Fetal Intestine Small intestine
18 chr5:107195800-107218200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr5:107196000-107199200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr5:107196000-107204200 Weak transcription Primary hematopoietic stem cells blood
21 chr5:107196000-107210800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:107196200-107199000 Weak transcription Dnd41 blood
23 chr5:107196200-107200200 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr5:107196400-107200800 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr5:107196400-107202600 Weak transcription Placenta Placenta
26 chr5:107196800-107197600 Strong transcription Ovary ovary
27 chr5:107196800-107197800 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr5:107196800-107197800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
29 chr5:107196800-107198000 Strong transcription Adipose Nuclei Adipose
30 chr5:107196800-107198000 Strong transcription Duodenum Mucosa Duodenum
31 chr5:107196800-107198200 Strong transcription Liver Liver
32 chr5:107196800-107203400 Weak transcription Stomach Smooth Muscle stomach
33 chr5:107196800-107205000 Weak transcription HSMM muscle
34 chr5:107196800-107223200 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr5:107197000-107200800 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr5:107197200-107197800 Strong transcription Primary T cells from cord blood blood
37 chr5:107197400-107197600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr5:107197400-107197600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr5:107197400-107197600 ZNF genes & repeats Pancreas Pancrea
40 chr5:107197400-107197800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr5:107197400-107197800 Genic enhancers Esophagus oesophagus
42 chr5:107197400-107197800 Genic enhancers Gastric stomach
43 chr5:107197400-107197800 ZNF genes & repeats Lung lung
44 chr5:107197400-107197800 Strong transcription Right Ventricle heart
45 chr5:107197400-107198600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015