Variant report

Variant	rs149177007
Chromosome Location	chr10:99190189-99190190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99189821-99190545	GM12892	blood:	n/a	n/a
2	POLR2A	chr10:99189834-99190494	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr10:99189118-99192258	GM12878	blood:	n/a	n/a
4	ZBTB33	chr10:99190098-99190448	K562	blood:	n/a	n/a
5	POLR2A	chr10:99189868-99190619	U87	brain:	n/a	n/a
6	POLR2A	chr10:99189980-99190534	GM12891	blood:	n/a	n/a
7	POLR2A	chr10:99190073-99190496	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr10:99189678-99195364	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr10:99189935-99190541	GM12878	blood:	n/a	n/a
10	POLR2A	chr10:99189962-99190489	GM12892	blood:	n/a	n/a
11	POLR2A	chr10:99189804-99190333	GM12878	blood:	n/a	n/a
12	POLR2A	chr10:99190083-99190323	GM12878	blood:	n/a	n/a
13	HEY1	chr10:99189969-99190480	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99188867..99192186-chr10:99193906..99196769,3	MCF-7	breast:
2	chr10:99189135..99191052-chr10:99205351..99206988,2	K562	blood:
3	chr10:99148085..99150519-chr10:99189341..99192060,3	K562	blood:
4	chr10:99187101..99190236-chr10:99202891..99208015,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224474	TF binding region
ENSG00000171307	Chromatin interaction
ENSG00000052749	Chromatin interaction
ENSG00000171311	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv948158	chr10:99189320-99193095	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99186000-99190200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:99187000-99190600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
3	chr10:99187800-99191000	Weak transcription	Ovary	ovary
4	chr10:99187800-99191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:99188200-99190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:99188400-99190200	Genic enhancers	Fetal Heart	heart
7	chr10:99188400-99190400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:99188400-99190800	Weak transcription	Pancreas	Pancrea
9	chr10:99188600-99190200	Weak transcription	Adipose Nuclei	Adipose
10	chr10:99188600-99190200	Weak transcription	Lung	lung
11	chr10:99188600-99190200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:99188600-99190200	Genic enhancers	HepG2	liver
13	chr10:99188600-99190400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:99188600-99190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:99188600-99190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:99188600-99190800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:99188600-99190800	Weak transcription	Gastric	stomach
18	chr10:99188600-99190800	Weak transcription	Right Ventricle	heart
19	chr10:99188600-99190800	Weak transcription	Spleen	Spleen
20	chr10:99188600-99191000	Weak transcription	Aorta	Aorta
21	chr10:99188600-99191000	Weak transcription	Esophagus	oesophagus
22	chr10:99188600-99191000	Weak transcription	Psoas Muscle	Psoas
23	chr10:99188600-99191000	Weak transcription	Small Intestine	intestine
24	chr10:99188600-99191200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:99188600-99192200	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr10:99188600-99192200	Strong transcription	Brain Anterior Caudate	brain
27	chr10:99188600-99192200	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:99188600-99195000	Weak transcription	Fetal Brain Male	brain
29	chr10:99188600-99197200	Strong transcription	HSMM	muscle
30	chr10:99188600-99200600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:99188600-99201400	Strong transcription	Left Ventricle	heart
32	chr10:99188600-99203200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:99188600-99203200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr10:99188600-99203200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:99188600-99203200	Strong transcription	Fetal Muscle Leg	muscle
36	chr10:99188600-99203600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:99188600-99204400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr10:99188600-99204400	Strong transcription	Fetal Thymus	thymus
39	chr10:99188600-99204600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:99188600-99204800	Weak transcription	Right Atrium	heart
41	chr10:99188800-99190400	Weak transcription	Primary B cells from cord blood	blood
42	chr10:99188800-99190400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:99188800-99190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:99188800-99190400	Weak transcription	Fetal Lung	lung
45	chr10:99188800-99190400	Weak transcription	NHLF	lung
46	chr10:99188800-99190600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:99188800-99192000	Strong transcription	NHEK	skin
48	chr10:99188800-99192200	Strong transcription	Fetal Intestine Small	intestine
49	chr10:99188800-99192400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr10:99188800-99195800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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