Variant report

Variant	rs149196004
Chromosome Location	chr6:36660666-36660667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36659288..36661808-chr6:36668728..36671591,2	MCF-7	breast:
2	chr6:36659558..36662002-chr6:36724611..36726643,2	MCF-7	breast:
3	chr6:36658024..36659928-chr6:36660591..36663281,3	MCF-7	breast:
4	chr6:36659068..36661515-chr6:36679186..36681005,2	MCF-7	breast:
5	chr6:36560786..36563528-chr6:36659372..36662028,2	K562	blood:
6	chr6:36650316..36652178-chr6:36659155..36660681,2	MCF-7	breast:
7	chr6:36560786..36563777-chr6:36658792..36660872,2	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36655200-36660800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:36655200-36661200	Weak transcription	Aorta	Aorta
4	chr6:36655200-36669400	Weak transcription	Gastric	stomach
5	chr6:36655600-36660800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:36655600-36660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:36655600-36661000	Weak transcription	HSMM	muscle
8	chr6:36655600-36663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:36655800-36660800	Weak transcription	Lung	lung
10	chr6:36656000-36661000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:36656200-36665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:36657400-36663600	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:36657800-36661200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:36658200-36661200	Enhancers	HMEC	breast
15	chr6:36658400-36661200	Enhancers	NHEK	skin
16	chr6:36658800-36661200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:36658800-36661400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:36658800-36663200	Enhancers	Fetal Heart	heart
19	chr6:36659000-36661000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:36659000-36661000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:36659200-36660800	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:36659200-36661000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:36659200-36661000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:36659200-36661000	Enhancers	GM12878-XiMat	blood
25	chr6:36659200-36661200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:36659200-36661400	Enhancers	Spleen	Spleen
27	chr6:36659400-36660800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:36659400-36660800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr6:36659400-36661000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:36659400-36661200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:36659400-36661200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr6:36659400-36661200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr6:36659400-36661400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:36659400-36661400	Enhancers	Esophagus	oesophagus
35	chr6:36659600-36661000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:36659600-36661000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:36659600-36661000	Enhancers	Duodenum Mucosa	Duodenum
38	chr6:36659600-36661000	Enhancers	HSMMtube	muscle
39	chr6:36659600-36661200	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:36659600-36661400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:36659600-36661400	Enhancers	Right Atrium	heart
42	chr6:36659600-36661400	Enhancers	Right Ventricle	heart
43	chr6:36659600-36661600	Enhancers	Left Ventricle	heart
44	chr6:36659800-36660800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:36659800-36661200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr6:36659800-36665800	Weak transcription	Fetal Intestine Small	intestine
47	chr6:36660000-36660800	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr6:36660000-36661000	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr6:36660000-36661000	Enhancers	Fetal Muscle Trunk	muscle
50	chr6:36660200-36661000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links