Variant report

Variant	rs149228723
Chromosome Location	chr11:59385053-59385054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr11:59382112-59385589	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59313058..59315835-chr11:59384202..59386133,2	K562	blood:
2	chr11:59380013..59385486-chr11:59434648..59438262,9	MCF-7	breast:
3	chr11:59379597..59385439-chr11:59434812..59438230,12	K562	blood:
4	chr11:59382734..59385576-chr11:59440781..59442919,2	K562	blood:
5	chr11:59324538..59326283-chr11:59383295..59385264,2	K562	blood:
6	chr11:59383955..59385521-chr11:59435044..59437957,2	MCF-7	breast:
7	chr11:59381143..59385193-chr11:59434975..59438411,10	K562	blood:
8	chr11:59352549..59354078-chr11:59384301..59386875,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STX3-2	chr11:59383619-59385512	NONHSAT021532

No data

Variant related genes	Relation type
OSBP	TF binding region
ENSG00000255139	TF binding region
ENSG00000252893	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59384400-59385200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:59384400-59385200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:59384400-59385200	Enhancers	HepG2	liver
4	chr11:59384400-59385400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:59384400-59385400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr11:59384400-59386000	Weak transcription	Placenta	Placenta
7	chr11:59384400-59390000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:59384400-59396600	Weak transcription	Fetal Thymus	thymus
9	chr11:59384400-59396800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:59384400-59397400	Weak transcription	Adipose Nuclei	Adipose
11	chr11:59384400-59402600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:59384400-59404400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:59384600-59385200	Weak transcription	Pancreas	Pancrea
14	chr11:59384800-59385400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:59384800-59385400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:59384800-59385400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:59384800-59385400	Enhancers	Dnd41	blood
18	chr11:59384800-59386200	Weak transcription	A549	lung
19	chr11:59384800-59395200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:59384800-59396800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:59384800-59396800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:59384800-59397000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:59384800-59397200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:59384800-59397200	Weak transcription	Liver	Liver
25	chr11:59384800-59402600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:59384800-59402800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:59384800-59404600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:59384800-59404800	Weak transcription	Brain Angular Gyrus	brain
29	chr11:59385000-59385400	Flanking Active TSS	K562	blood
30	chr11:59385000-59396600	Weak transcription	Primary T cells from cord blood	blood
31	chr11:59385000-59404400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:59385000-59404800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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