Variant report

Variant	rs149258355
Chromosome Location	chr19:41193694-41193695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr19:41193194-41193866	K562	blood:	n/a	chr19:41193342-41193357 chr19:41193713-41193728 chr19:41193342-41193357 chr19:41193342-41193357 chr19:41193713-41193728
2	RUNX3	chr19:41193020-41193983	GM12878	blood:	n/a	chr19:41193522-41193539
3	NFATC1	chr19:41193546-41194098	GM12878	blood:	n/a	n/a
4	MTA3	chr19:41193188-41193902	GM12878	blood:	n/a	n/a
5	USF1	chr19:41193403-41194101	K562	blood:	n/a	n/a
6	STAT5A	chr19:41193177-41193935	GM12878	blood:	n/a	n/a
7	MYC	chr19:41193642-41193907	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
8	CHD2	chr19:41193256-41193983	GM12878	blood:	n/a	n/a
9	ATF2	chr19:41193253-41193920	GM12878	blood:	n/a	chr19:41193593-41193604
10	MYC	chr19:41193345-41193987	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
11	PML	chr19:41193047-41193968	GM12878	blood:	n/a	n/a
12	POLR2A	chr19:41193649-41193843	GM12878	blood:	n/a	n/a
13	MXI1	chr19:41193304-41193774	GM12878	blood:	n/a	n/a
14	MAX	chr19:41193408-41193899	GM12878	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
15	STAT5A	chr19:41193052-41195402	K562	blood:	n/a	n/a
16	POLR2A	chr19:41193287-41197366	IMR90	lung:	n/a	n/a
17	MAX	chr19:41193323-41193996	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
18	MXI1	chr19:41192631-41197581	IMR90	lung:	n/a	chr19:41193038-41193053 chr19:41193021-41193036
19	BCL3	chr19:41193330-41194030	GM12878	blood:	n/a	n/a
20	MAFK	chr19:41193450-41193893	K562	blood:	n/a	chr19:41193639-41193655
21	MXI1	chr19:41193489-41197689	SK-N-SH	brain:	n/a	n/a
22	MXI1	chr19:41192932-41193912	K562	blood:	n/a	chr19:41193038-41193053 chr19:41193021-41193036
23	TCF3	chr19:41193617-41194023	GM12878	blood:	n/a	n/a
24	NRF1	chr19:41193349-41193710	K562	blood:	n/a	chr19:41193534-41193545
25	JUND	chr19:41193386-41193864	K562	blood:	n/a	chr19:41193594-41193603
26	MYC	chr19:41193672-41193702	MCF10A-Er-Src	breast:	n/a	n/a
27	MAZ	chr19:41193456-41193848	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
28	NFATC1	chr19:41193518-41194088	GM12878	blood:	n/a	n/a
29	TBL1XR1	chr19:41193316-41193704	GM12878	blood:	n/a	n/a
30	BHLHE40	chr19:41193254-41193697	GM12878	blood:	n/a	n/a
31	EP300	chr19:41193495-41194070	K562	blood:	n/a	n/a
32	PAX5	chr19:41193126-41194048	GM12878	blood:	n/a	n/a
33	MAX	chr19:41193238-41194546	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835 chr19:41194393-41194403
34	RFX5	chr19:41193582-41193724	K562	blood:	n/a	n/a
35	BCL3	chr19:41193138-41194079	GM12878	blood:	n/a	n/a
36	MYC	chr19:41193373-41194002	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
37	BHLHE40	chr19:41193321-41193981	K562	blood:	n/a	n/a
38	ATF2	chr19:41193129-41193822	GM12878	blood:	n/a	chr19:41193593-41193604
39	RCOR1	chr19:41193480-41194224	K562	blood:	n/a	n/a
40	UBTF	chr19:41193454-41193863	K562	blood:	n/a	n/a
41	POLR2A	chr19:41193285-41193927	K562	blood:	n/a	n/a
42	RUNX3	chr19:41193032-41193983	GM12878	blood:	n/a	chr19:41193522-41193539
43	EP300	chr19:41193284-41193840	GM12878	blood:	n/a	n/a
44	CHD1	chr19:41192595-41197591	IMR90	lung:	n/a	chr19:41196943-41196953 chr19:41196593-41196603
45	POLR2A	chr19:41193309-41194264	K562	blood:	n/a	n/a
46	USF2	chr19:41193474-41194000	GM12878	blood:	n/a	n/a
47	MTA3	chr19:41193138-41194143	GM12878	blood:	n/a	n/a
48	STAT5A	chr19:41193198-41195366	GM12878	blood:	n/a	n/a
49	MAX	chr19:41193375-41193958	K562	blood:	n/a	chr19:41193826-41193835 chr19:41193824-41193835 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193825-41193834 chr19:41193823-41193836 chr19:41193825-41193834 chr19:41193824-41193835
50	PBX3	chr19:41193624-41193947	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:41193662-41193712	AoSMC	blood vessel:	n/a
2	chr19:41193662-41193712	NHDF-neo	bronchial:	n/a
3	chr19:41193662-41193712	U87	brain:	n/a
4	chr19:41193662-41193712	PANC-1	pancreas:	n/a
5	chr19:41193662-41193712	ovcar-3	ovarian:	n/a
6	chr19:41193662-41193712	NHBE	bronchial:	n/a
7	chr19:41193662-41193712	T-47D	breast:	n/a
8	chr19:41193662-41193712	GM12891	blood:	n/a
9	chr19:41193662-41193712	HUVEC	blood vessel:	n/a
10	chr19:41193662-41193712	SKMC	muscle:	n/a
11	chr19:41193662-41193712	MCF-7	breast:	n/a
12	chr19:41193662-41193712	Caco-2	colon:	n/a
13	chr19:41193662-41193712	GM12878	blood:	n/a
14	chr19:41193662-41193712	HL-60	blood:	n/a
15	chr19:41193662-41193712	ECC-1	luminal epithelium:	n/a
16	chr19:41193662-41193712	AG09309	skin:	n/a
17	chr19:41193662-41193712	A549	lung:	n/a
18	chr19:41193662-41193712	GM12892	blood:	n/a
19	chr19:41193662-41193712	HPAEpiC	pulmonary alveolar:	n/a
20	chr19:41193662-41193712	GM06990	blood:	n/a
21	chr19:41193662-41193712	BJ	skin:	n/a
22	chr19:41193662-41193712	IMR90	lung:	fetal
23	chr19:41193662-41193712	H1-hESC	embryonic stem cell:	embryo
24	chr19:41193662-41193712	HNPCEpiC	eye:	n/a
25	chr19:41193662-41193712	NB4	blood:	n/a
26	chr19:41193662-41193712	Hela-S3	cervix:	n/a
27	chr19:41193662-41193712	HIPEpiC	eye:	n/a
28	chr19:41193662-41193712	AG04449	skin:	fetal
29	chr19:41193662-41193712	PrEC	prostate:	n/a
30	chr19:41193662-41193712	HRE	kidney:	n/a
31	chr19:41193662-41193712	HCPEpiC	choroid plexus:	n/a
32	chr19:41193662-41193712	AG10803	skin:	n/a
33	chr19:41193662-41193712	HCF	heart:	n/a
34	chr19:41193662-41193712	ProgFib	skin:	n/a
35	chr19:41193662-41193712	HEK293	kidney:	embryo
36	chr19:41193662-41193712	CMK	blood:	n/a
37	chr19:41193662-41193712	HRCEpiC	kidney:	n/a
38	chr19:41193662-41193712	Hepatocyte	liver:	n/a
39	chr19:41193662-41193712	HCM	heart:	n/a
40	chr19:41193662-41193712	HCT-116	colon:	n/a
41	chr19:41193662-41193712	LNCaP	prostate:	n/a
42	chr19:41193662-41193712	SAEC	small airway:	n/a
43	chr19:41193662-41193712	HAEpiC	amniotic membrane:	n/a
44	chr19:41193662-41193712	RPTEC	kidney:	n/a
45	chr19:41193662-41193712	AG09319	gingival:	n/a
46	chr19:41193662-41193712	NT2-D1	testis:	n/a
47	chr19:41193662-41193712	HEEpiC	esophagus:	n/a
48	chr19:41193662-41193712	NH-A	brain:	n/a
49	chr19:41193662-41193712	SK-N-SH_RA	brain:	n/a
50	chr19:41193662-41193712	HepG2	liver:	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:41193561..41199772-chr19:41221208..41225709,11	K562	blood:
2	chr19:41193560..41201987-chr19:41206623..41212331,16	K562	blood:
3	chr19:41192210..41194375-chr19:41305816..41308792,2	MCF-7	breast:
4	chr19:41186952..41192144-chr19:41192156..41195982,8	MCF-7	breast:
5	chr19:41185972..41188881-chr19:41192870..41195079,2	K562	blood:
6	chr19:41191573..41194549-chr19:41222613..41224121,2	K562	blood:
7	chr19:41191702..41194594-chr19:41196563..41198200,2	MCF-7	breast:
8	chr19:41193182..41199089-chr19:41206241..41209564,9	MCF-7	breast:
9	chr19:41191453..41200740-chr19:41219595..41226457,20	MCF-7	breast:

Variant related genes	Relation type
NUMBL	TF binding region
NUMBL	CpG island
ENSG00000268797	Chromatin interaction
ENSG00000105245	Chromatin interaction
ENSG00000269858	Chromatin interaction
ENSG00000123815	Chromatin interaction
ENSG00000086544	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830682	chr19:40880127-41270055	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv911723	chr19:41075990-41195279	Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv911727	chr19:41111069-41200511	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv911728	chr19:41111069-41211056	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	esv1800615	chr19:41127465-41270055	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv1058707	chr19:41146147-41200820	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1067017	chr19:41185992-41231251	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
8	esv3432319	chr19:41190112-41196510	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	esv3391681	chr19:41192212-41196610	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
10	nsv820299	chr19:41193264-41195994	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41169800-41195400	Weak transcription	Psoas Muscle	Psoas
2	chr19:41175800-41194200	Weak transcription	Fetal Heart	heart
3	chr19:41175800-41196000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr19:41176000-41195200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr19:41176200-41195600	Weak transcription	Small Intestine	intestine
6	chr19:41179200-41194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:41179200-41195800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr19:41179800-41196000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr19:41181200-41195200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr19:41184200-41193800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr19:41184600-41194800	Weak transcription	Fetal Thymus	thymus
12	chr19:41186600-41194200	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr19:41187000-41195600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr19:41187200-41195200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr19:41187200-41195800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr19:41187400-41195200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr19:41187600-41195800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr19:41188800-41195800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr19:41191800-41194800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr19:41191800-41194800	Weak transcription	HMEC	breast
21	chr19:41191800-41195600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr19:41192000-41193800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr19:41192000-41193800	Weak transcription	Pancreas	Pancrea
24	chr19:41192000-41194400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr19:41192000-41194800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:41192000-41195000	Weak transcription	Fetal Intestine Large	intestine
27	chr19:41192000-41195200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:41192000-41195200	Weak transcription	Brain Substantia Nigra	brain
29	chr19:41192200-41193800	Weak transcription	Brain Angular Gyrus	brain
30	chr19:41192200-41194600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr19:41192600-41193800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr19:41192600-41193800	Weak transcription	Fetal Kidney	kidney
33	chr19:41192600-41194600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr19:41192600-41195200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr19:41192600-41195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:41192600-41195800	Weak transcription	Liver	Liver
37	chr19:41192600-41196000	Enhancers	Primary B cells from peripheral blood	blood
38	chr19:41192600-41196000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr19:41192800-41193800	Weak transcription	Brain Hippocampus Middle	brain
40	chr19:41192800-41194000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr19:41192800-41194000	Enhancers	GM12878-XiMat	blood
42	chr19:41192800-41194600	Enhancers	Placenta	Placenta
43	chr19:41192800-41194800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:41192800-41194800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr19:41192800-41194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr19:41192800-41194800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr19:41192800-41194800	Weak transcription	Dnd41	blood
48	chr19:41192800-41195000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr19:41192800-41195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr19:41192800-41195200	Enhancers	Primary B cells from cord blood	blood

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