Variant report

Variant	rs1492652
Chromosome Location	chr8:96306378-96306379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10096750	0.87[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs2452475	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2452476	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2514554	0.89[CEU][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap]
rs2514557	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4492337	0.82[CEU][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4734301	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7835921	0.81[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023866	chr8:96273255-96306378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1492652	C8orf37	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96306000-96306600	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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