Variant report

Variant	rs149316722
Chromosome Location	chr3:43329884-43329885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43328576..43330209-chr3:43363736..43365348,2	K562	blood:
2	chr3:43328082..43330424-chr3:43353703..43355564,2	K562	blood:
3	chr3:43320796..43322949-chr3:43328990..43330664,2	K562	blood:
4	chr3:43327640..43330625-chr3:43731199..43733951,3	K562	blood:
5	chr3:43328459..43331117-chr3:43356191..43358697,2	K562	blood:
6	chr3:43329569..43331859-chr3:43336954..43339880,3	MCF-7	breast:
7	chr3:43325116..43327718-chr3:43329418..43331490,2	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000011198	Chromatin interaction
ENSG00000241939	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3420235	chr3:43326048-43330246	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv876732	chr3:43326887-43360879	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv590153	chr3:43327873-43329913	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv590154	chr3:43327873-43334020	Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv590155	chr3:43327873-43334878	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv590157	chr3:43327924-43329913	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	nsv590158	chr3:43327924-43334878	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv590159	chr3:43328010-43329913	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	nsv590160	chr3:43328076-43334878	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43327400-43330200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr3:43327400-43330600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:43327400-43332000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr3:43327600-43330200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:43327600-43330200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:43327600-43330200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:43327600-43330200	Active TSS	Colon Smooth Muscle	Colon
8	chr3:43327600-43330200	Active TSS	Fetal Intestine Small	intestine
9	chr3:43327600-43330200	Active TSS	Rectal Smooth Muscle	rectum
10	chr3:43327600-43330400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr3:43327600-43330400	Active TSS	Primary T cells from cord blood	blood
12	chr3:43327600-43330400	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr3:43327600-43330400	Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr3:43327600-43330400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:43327600-43330400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:43327600-43330400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr3:43327600-43330400	Active TSS	Colonic Mucosa	Colon
18	chr3:43327600-43330400	Active TSS	Fetal Thymus	thymus
19	chr3:43327600-43330400	Active TSS	Ovary	ovary
20	chr3:43327600-43330400	Active TSS	Right Atrium	heart
21	chr3:43327600-43330400	Active TSS	HMEC	breast
22	chr3:43327600-43330400	Active TSS	HUVEC	blood vessel
23	chr3:43327600-43330600	Active TSS	Psoas Muscle	Psoas
24	chr3:43327600-43330600	Active TSS	Right Ventricle	heart
25	chr3:43327600-43330600	Active TSS	Thymus	Thymus
26	chr3:43327600-43330600	Active TSS	GM12878-XiMat	blood
27	chr3:43327600-43330600	Active TSS	NHDF-Ad	bronchial
28	chr3:43327800-43330200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr3:43327800-43330200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:43327800-43330200	Active TSS	NHEK	skin
31	chr3:43327800-43330400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:43327800-43330400	Active TSS	Primary T cells fromperipheralblood	blood
33	chr3:43327800-43330400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:43327800-43330400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:43327800-43330400	Active TSS	Stomach Smooth Muscle	stomach
36	chr3:43327800-43330600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr3:43327800-43330800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:43327800-43331200	Active TSS	Fetal Muscle Trunk	muscle
39	chr3:43328000-43330200	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr3:43328600-43330400	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr3:43328600-43330400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:43328600-43330400	Active TSS	Stomach Mucosa	stomach
43	chr3:43328600-43330800	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr3:43328600-43331400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:43328800-43330000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:43328800-43330600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:43328800-43330800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
48	chr3:43328800-43331600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr3:43328800-43333000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr3:43329000-43330400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links