Variant report

Variant	rs149332934
Chromosome Location	chr1:223886676-223886677
allele	-/AAAATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:223885577-223886678	SK-N-SH	brain:	n/a	chr1:223886105-223886118 chr1:223886070-223886088

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:223886668..223890344-chr1:223897746..223900327,3	K562	blood:
2	chr1:223886105..223888614-chr1:223940802..223943504,3	K562	blood:
3	chr1:223886106..223888847-chr1:223934489..223936535,2	K562	blood:
4	chr1:223884772..223887549-chr1:223936018..223938654,2	MCF-7	breast:
5	chr1:223886322..223888614-chr1:223940802..223943504,2	K562	blood:
6	chr1:223884441..223887114-chr1:223935723..223937532,2	MCF-7	breast:
7	chr1:223885961..223896993-chr1:223898177..223910405,32	MCF-7	breast:
8	chr1:223885792..223886704-chr1:223936418..223937470,7	MCF-7	breast:
9	chr1:223886106..223889532-chr1:223933715..223936535,3	K562	blood:

No data

Variant related genes	Relation type
CAPN2	TF binding region
ENSG00000162909	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3361888	chr1:223725597-224114846	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1007380	chr1:223834380-224042190	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv535310	chr1:223834380-224042190	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv34082	chr1:223851018-224144509	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv873213	chr1:223885843-223924236	Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223881800-223887000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:223883600-223887800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:223883800-223887600	Weak transcription	Fetal Intestine Large	intestine
4	chr1:223884000-223888400	Weak transcription	Right Atrium	heart
5	chr1:223884200-223887600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:223884200-223888000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:223884400-223887400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:223884400-223888400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:223884400-223888800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:223884400-223888800	Weak transcription	Pancreas	Pancrea
11	chr1:223884600-223886800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:223885600-223887400	Enhancers	A549	lung
13	chr1:223885600-223888400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:223885800-223887400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:223885800-223887800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:223885800-223888600	Enhancers	NHDF-Ad	bronchial
17	chr1:223886000-223887800	Enhancers	NHEK	skin
18	chr1:223886000-223888400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:223886200-223887200	Weak transcription	NHLF	lung
20	chr1:223886200-223888000	Enhancers	Hela-S3	cervix
21	chr1:223886200-223888400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:223886200-223888400	Enhancers	HMEC	breast
23	chr1:223886200-223888600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:223886200-223889400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:223886200-223889400	Enhancers	Placenta	Placenta
26	chr1:223886400-223887000	Weak transcription	HSMM	muscle
27	chr1:223886400-223887200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:223886400-223887200	Weak transcription	NH-A	brain
29	chr1:223886400-223887400	Weak transcription	Aorta	Aorta
30	chr1:223886400-223887800	Weak transcription	HUVEC	blood vessel
31	chr1:223886400-223888000	Weak transcription	Adipose Nuclei	Adipose
32	chr1:223886400-223888200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:223886400-223888400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr1:223886400-223888400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr1:223886400-223888400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:223886400-223888800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr1:223886400-223889000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:223886400-223890400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr1:223886400-223892400	Weak transcription	Brain Hippocampus Middle	brain
40	chr1:223886400-223892400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr1:223886400-223892400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr1:223886400-223894200	Weak transcription	Brain Angular Gyrus	brain
43	chr1:223886600-223887000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:223886600-223887000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr1:223886600-223887000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:223886600-223887000	Weak transcription	K562	blood
47	chr1:223886600-223887000	Weak transcription	Osteobl	bone
48	chr1:223886600-223887800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:223886600-223888000	Weak transcription	Ovary	ovary
50	chr1:223886600-223888200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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