Variant report

Variant	rs1493729
Chromosome Location	chr11:26471110-26471111
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501055	1.00[CEU][hapmap]
rs10734375	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11029519	1.00[MEX][hapmap]
rs1381176	1.00[TSI][hapmap]
rs16915686	1.00[CEU][hapmap]
rs16915692	1.00[CEU][hapmap]
rs1809782	0.88[AFR][1000 genomes]
rs1845354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2047099	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35332015	0.91[AFR][1000 genomes]
rs7124264	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7124984	1.00[CEU][hapmap]
rs7940238	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7940868	1.00[CEU][hapmap]
rs7950245	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs903152	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26462600-26473400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:26468600-26471600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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