Variant report

Variant	rs149493246
Chromosome Location	chr13:97771631-97771632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97770807..97773775-chr13:97872906..97876647,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97762800-97773600	Weak transcription	K562	blood
2	chr13:97766800-97772200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:97766800-97778200	Weak transcription	Esophagus	oesophagus
4	chr13:97767800-97771800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:97767800-97772000	Enhancers	Rectal Smooth Muscle	rectum
6	chr13:97767800-97776600	Weak transcription	Gastric	stomach
7	chr13:97767800-97777200	Weak transcription	Fetal Kidney	kidney
8	chr13:97768000-97772800	Weak transcription	NHDF-Ad	bronchial
9	chr13:97768000-97773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:97768000-97773000	Weak transcription	A549	lung
11	chr13:97768000-97777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:97768600-97774000	Weak transcription	Placenta	Placenta
13	chr13:97768800-97772200	Weak transcription	Brain Substantia Nigra	brain
14	chr13:97768800-97775600	Weak transcription	Lung	lung
15	chr13:97768800-97776200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:97769000-97772200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr13:97769000-97778400	Weak transcription	Right Atrium	heart
18	chr13:97769200-97771800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:97769200-97772200	Weak transcription	Brain Angular Gyrus	brain
20	chr13:97769200-97772600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr13:97769200-97772600	Weak transcription	HSMMtube	muscle
22	chr13:97769200-97772800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:97769200-97772800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr13:97769200-97772800	Weak transcription	NH-A	brain
25	chr13:97769200-97774800	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:97769400-97772400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr13:97769400-97772400	Weak transcription	Osteobl	bone
28	chr13:97769400-97772600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:97769400-97772800	Weak transcription	Brain Anterior Caudate	brain
30	chr13:97769400-97772800	Weak transcription	NHLF	lung
31	chr13:97769600-97772600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:97769600-97773000	Weak transcription	HSMM	muscle
33	chr13:97769600-97774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:97770000-97772200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr13:97770000-97772400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr13:97770000-97772800	Weak transcription	Hela-S3	cervix
37	chr13:97770000-97774800	Weak transcription	Stomach Mucosa	stomach
38	chr13:97770200-97773800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr13:97770200-97774000	Weak transcription	Right Ventricle	heart
40	chr13:97770200-97775000	Weak transcription	Aorta	Aorta
41	chr13:97770200-97775000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:97770200-97775000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr13:97770200-97776600	Weak transcription	Fetal Stomach	stomach
44	chr13:97770200-97777200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr13:97770400-97774000	Weak transcription	Fetal Heart	heart
46	chr13:97770400-97777000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr13:97770600-97772400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:97770600-97774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr13:97770800-97774000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr13:97770800-97775000	Weak transcription	Ovary	ovary

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