Variant report

Variant	rs149511398
Chromosome Location	chr9:95673897-95673898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:95673734-95674174	MCF-7	breast:	n/a	chr9:95674160-95674171 chr9:95673917-95673928 chr9:95674160-95674171
2	CEBPB	chr9:95673895-95673966	Hela-S3	cervix:	n/a	chr9:95673917-95673928
3	TCF12	chr9:95673788-95674732	A549	lung:	n/a	n/a
4	SRF	chr9:95673671-95674315	MCF-7	breast:	n/a	chr9:95673983-95674001
5	SRF	chr9:95673653-95674285	MCF-7	breast:	n/a	chr9:95673983-95674001
6	SP1	chr9:95673833-95674521	A549	lung:	n/a	n/a
7	CEBPB	chr9:95673759-95674088	A549	lung:	n/a	chr9:95673917-95673928
8	CEBPB	chr9:95673745-95674076	HepG2	liver:	n/a	chr9:95673917-95673928

No.	Distal block	Cell Line	Cell type
1	chr9:95672518..95675002-chr9:95676684..95678735,2	MCF-7	breast:
2	chr9:95526781..95528975-chr9:95672458..95674391,2	MCF-7	breast:
3	chr9:95668983..95671268-chr9:95672944..95675033,2	K562	blood:

Variant related genes	Relation type
ALOX15P2	TF binding region
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1818795	chr9:95656340-95689158	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv982639	chr9:95671744-95685131	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95673000-95675000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:95673400-95674400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:95673600-95674000	Enhancers	A549	lung
4	chr9:95673600-95674200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
5	chr9:95673600-95674600	Enhancers	Fetal Lung	lung
6	chr9:95673600-95675000	Enhancers	Fetal Stomach	stomach
7	chr9:95673800-95674000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:95673800-95674000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr9:95673800-95674000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
10	chr9:95673800-95674000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr9:95673800-95674000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:95673800-95674000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
13	chr9:95673800-95674000	Enhancers	Brain Germinal Matrix	brain
14	chr9:95673800-95674000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr9:95673800-95674000	Bivalent Enhancer	NH-A	brain
16	chr9:95673800-95674200	Enhancers	Brain Hippocampus Middle	brain
17	chr9:95673800-95674200	Enhancers	Fetal Kidney	kidney
18	chr9:95673800-95674200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
19	chr9:95673800-95674400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr9:95673800-95674400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:95673800-95674400	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr9:95673800-95674400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:95673800-95674400	Enhancers	Hela-S3	cervix
24	chr9:95673800-95674600	Enhancers	Adipose Nuclei	Adipose
25	chr9:95673800-95674600	Enhancers	Brain Anterior Caudate	brain
26	chr9:95673800-95674600	Bivalent Enhancer	Stomach Mucosa	stomach
27	chr9:95673800-95674800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:95673800-95674800	Enhancers	Liver	Liver
29	chr9:95673800-95674800	Enhancers	Colonic Mucosa	Colon
30	chr9:95673800-95674800	Enhancers	HepG2	liver
31	chr9:95673800-95675000	Enhancers	Gastric	stomach
32	chr9:95673800-95675200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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