Variant report

Variant	rs1495139
Chromosome Location	chr4:85190409-85190410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10030773	0.82[ASN][1000 genomes]
rs10034796	0.99[ASN][1000 genomes]
rs10034808	0.99[ASN][1000 genomes]
rs10035004	0.98[ASN][1000 genomes]
rs12640182	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13144844	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008409	0.94[ASN][1000 genomes]
rs17008426	0.81[ASN][1000 genomes]
rs17008445	0.99[ASN][1000 genomes]
rs17364280	0.84[CHB][hapmap]
rs1994957	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2165621	0.81[ASN][1000 genomes]
rs2197121	0.94[ASN][1000 genomes]
rs28394162	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348708	0.82[EUR][1000 genomes]
rs348709	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7680414	0.94[ASN][1000 genomes]
rs7689070	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85189200-85192200	Enhancers	Fetal Intestine Large	intestine
2	chr4:85189800-85191200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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