Variant report

Variant	rs149538849
Chromosome Location	chr2:40581589-40581590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1010508	chr2:40526981-40590777	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv535655	chr2:40526981-40590777	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv873914	chr2:40573350-40586022	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv873915	chr2:40573350-40615520	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3336742	chr2:40581305-40581886	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40552800-40590600	Weak transcription	Fetal Kidney	kidney
2	chr2:40571600-40582600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:40574600-40586000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:40574600-40590600	Weak transcription	Aorta	Aorta
5	chr2:40576800-40587600	Weak transcription	NH-A	brain
6	chr2:40578400-40582000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:40578400-40583400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:40578600-40583000	Enhancers	Fetal Heart	heart
9	chr2:40578800-40581600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:40579400-40582400	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:40579600-40586800	Enhancers	Colon Smooth Muscle	Colon
12	chr2:40579800-40581800	Enhancers	Fetal Stomach	stomach
13	chr2:40579800-40582000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:40580000-40581600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:40580200-40583000	Weak transcription	Right Ventricle	heart
16	chr2:40580200-40583200	Enhancers	Hela-S3	cervix
17	chr2:40580200-40587600	Weak transcription	NHLF	lung
18	chr2:40580600-40584800	Weak transcription	Osteobl	bone
19	chr2:40580600-40586800	Weak transcription	NHDF-Ad	bronchial
20	chr2:40580600-40587600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:40580600-40587800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:40580600-40587800	Weak transcription	HMEC	breast
23	chr2:40581000-40581600	Weak transcription	Right Atrium	heart
24	chr2:40581000-40581800	Enhancers	Psoas Muscle	Psoas
25	chr2:40581000-40582400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:40581200-40581600	Weak transcription	Left Ventricle	heart
27	chr2:40581200-40587600	Weak transcription	HSMM	muscle
28	chr2:40581200-40590400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:40581200-40591800	Weak transcription	Primary monocytes fromperipheralblood	blood

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