Variant report

Variant	rs149540000
Chromosome Location	chr3:134624441-134624442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv822262	chr3:134623349-134628638	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134619400-134624600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134621800-134624600	Enhancers	Fetal Stomach	stomach
3	chr3:134621800-134625000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:134621800-134625200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:134622000-134625800	Enhancers	Brain Germinal Matrix	brain
6	chr3:134622000-134625800	Enhancers	Fetal Brain Male	brain
7	chr3:134622200-134624600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:134622400-134624800	Enhancers	Fetal Thymus	thymus
9	chr3:134622600-134624600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:134622600-134624800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:134622600-134624800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:134622600-134624800	Enhancers	Fetal Brain Female	brain
13	chr3:134622600-134624800	Flanking Active TSS	GM12878-XiMat	blood
14	chr3:134622800-134624800	Enhancers	Fetal Muscle Leg	muscle
15	chr3:134623000-134624600	Enhancers	Left Ventricle	heart
16	chr3:134623000-134624600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:134623200-134624600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:134624000-134624600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:134624200-134624600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:134624200-134624600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:134624200-134624600	Enhancers	Fetal Heart	heart
22	chr3:134624200-134624800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr3:134624400-134624600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:134624400-134625200	Enhancers	Dnd41	blood
25	chr3:134624400-134625400	Weak transcription	Right Ventricle	heart
26	chr3:134624400-134626600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:134624400-134629400	Weak transcription	Brain Anterior Caudate	brain
28	chr3:134624400-134630000	Weak transcription	Colon Smooth Muscle	Colon

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