Variant report

Variant	rs149543486
Chromosome Location	chr10:4288420-4288421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:4287970-4290180	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
LINC00702	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1051538	chr10:4274395-4291004	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1052378	chr10:4286880-4307024	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3317084	chr10:4288052-4293650	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4276000-4292200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4285200-4288600	Weak transcription	Fetal Thymus	thymus
3	chr10:4285200-4288800	Weak transcription	Ovary	ovary
4	chr10:4285200-4291800	Weak transcription	Psoas Muscle	Psoas
5	chr10:4285400-4288600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:4285600-4296200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:4285800-4288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:4285800-4289400	Weak transcription	Adipose Nuclei	Adipose
9	chr10:4286000-4288600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4286000-4288600	Enhancers	Osteobl	bone
11	chr10:4286000-4289000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:4286000-4289600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:4286000-4290200	Enhancers	HMEC	breast
14	chr10:4286000-4292400	Weak transcription	Right Ventricle	heart
15	chr10:4286000-4294800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:4286200-4289400	Enhancers	HSMM	muscle
17	chr10:4286400-4288600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:4286400-4289000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:4286800-4288600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:4286800-4288600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:4286800-4289000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:4286800-4296200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:4287000-4288600	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:4287000-4288600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:4287000-4288800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:4287000-4289400	Enhancers	NHDF-Ad	bronchial
27	chr10:4287200-4288600	Weak transcription	Fetal Heart	heart
28	chr10:4287200-4289800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:4287400-4288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:4287600-4288600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:4287800-4289400	Enhancers	NH-A	brain
32	chr10:4288000-4289000	Enhancers	HSMMtube	muscle
33	chr10:4288000-4289800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:4288000-4289800	Enhancers	HUVEC	blood vessel
35	chr10:4288000-4290000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:4288000-4290000	Enhancers	Hela-S3	cervix
37	chr10:4288000-4290200	Enhancers	NHEK	skin
38	chr10:4288200-4288600	Enhancers	Aorta	Aorta
39	chr10:4288200-4288800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:4288200-4289000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:4288200-4290000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:4288400-4289400	Weak transcription	Right Atrium	heart
43	chr10:4288400-4290000	Enhancers	NHLF	lung
44	chr10:4288400-4291000	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links