Variant report

Variant	rs149544681
Chromosome Location	chr6:81233657-81233658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81230200-81234000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81230400-81237800	Weak transcription	Pancreas	Pancrea
3	chr6:81230800-81234000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:81231800-81233800	Enhancers	NHDF-Ad	bronchial
5	chr6:81231800-81234000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:81231800-81234000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:81231800-81234200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:81231800-81234200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:81232000-81233800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:81232000-81234000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:81232000-81234200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:81232200-81233800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:81232400-81233800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:81232400-81234000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:81232400-81234000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:81232400-81234000	Enhancers	Fetal Heart	heart
17	chr6:81232400-81234000	Enhancers	HSMMtube	muscle
18	chr6:81232400-81234000	Enhancers	NHLF	lung
19	chr6:81232400-81234200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:81232400-81235800	Enhancers	Fetal Brain Male	brain
21	chr6:81232600-81233800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr6:81232600-81233800	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr6:81232800-81234000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:81232800-81234000	Enhancers	Right Ventricle	heart
25	chr6:81232800-81234200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:81232800-81234200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:81232800-81237000	Weak transcription	Fetal Lung	lung
28	chr6:81233000-81233800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr6:81233000-81234000	Enhancers	Small Intestine	intestine
30	chr6:81233000-81234000	Flanking Active TSS	HUVEC	blood vessel
31	chr6:81233000-81234200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr6:81233000-81234200	Enhancers	Psoas Muscle	Psoas
33	chr6:81233000-81234200	Enhancers	HepG2	liver
34	chr6:81233200-81234000	Enhancers	Hela-S3	cervix
35	chr6:81233200-81234200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:81233400-81233800	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:81233400-81233800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:81233400-81233800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr6:81233400-81234200	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:81233400-81237400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:81233600-81233800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:81233600-81233800	Enhancers	Fetal Kidney	kidney
43	chr6:81233600-81234000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr6:81233600-81234200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:81233600-81234200	Enhancers	Aorta	Aorta
46	chr6:81233600-81234200	Enhancers	Left Ventricle	heart
47	chr6:81233600-81234200	Enhancers	Rectal Smooth Muscle	rectum
48	chr6:81233600-81234200	Enhancers	Right Atrium	heart
49	chr6:81233600-81234200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:81233600-81249600	Weak transcription	HSMM	muscle

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