Variant report

Variant	rs149583102
Chromosome Location	chr11:73307970-73307971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73307696..73311155-chr11:73356118..73358808,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000021300	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3384593	chr11:73307854-73310302	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv555412	chr11:73307936-73308644	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73290000-73308000	Weak transcription	Primary B cells from cord blood	blood
2	chr11:73290400-73308000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:73306000-73308000	Enhancers	Primary T cells from cord blood	blood
4	chr11:73306000-73308200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:73306600-73308400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:73306800-73308000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:73306800-73308400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:73307000-73308000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr11:73307000-73308000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:73307000-73308000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:73307000-73308000	Enhancers	Colon Smooth Muscle	Colon
12	chr11:73307000-73308000	Enhancers	Fetal Thymus	thymus
13	chr11:73307000-73308000	Enhancers	Right Ventricle	heart
14	chr11:73307000-73308200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:73307000-73308200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:73307000-73308400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:73307000-73308400	Enhancers	Small Intestine	intestine
18	chr11:73307200-73308000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:73307200-73308000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:73307200-73308200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:73307200-73308600	Flanking Active TSS	Dnd41	blood
22	chr11:73307400-73308000	Enhancers	Liver	Liver
23	chr11:73307400-73308000	Enhancers	K562	blood
24	chr11:73307400-73308200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr11:73307400-73308200	Flanking Active TSS	Fetal Brain Female	brain
26	chr11:73307400-73308400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr11:73307400-73308400	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr11:73307400-73308400	Flanking Active TSS	HepG2	liver
29	chr11:73307400-73310200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:73307600-73308000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:73307600-73308000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:73307600-73308000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:73307600-73308000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:73307600-73308000	Active TSS	Brain Angular Gyrus	brain
35	chr11:73307600-73308000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:73307600-73308000	Enhancers	Left Ventricle	heart
37	chr11:73307600-73308000	Enhancers	Lung	lung
38	chr11:73307600-73308000	Enhancers	Pancreas	Pancrea
39	chr11:73307600-73308000	Active TSS	Rectal Smooth Muscle	rectum
40	chr11:73307600-73308000	Enhancers	Right Atrium	heart
41	chr11:73307600-73308000	Enhancers	HSMMtube	muscle
42	chr11:73307600-73308200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:73307600-73308200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
44	chr11:73307600-73308200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr11:73307600-73308200	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:73307600-73308200	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr11:73307600-73308200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:73307600-73308200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr11:73307600-73308200	Active TSS	Colonic Mucosa	Colon
50	chr11:73307600-73308200	Enhancers	Fetal Heart	heart

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