Variant report
| Variant | rs1495889 |
|---|---|
| Chromosome Location | chr3:86411527-86411528 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CADM2-9 | chr3:86411282-86411624 | NONHSAT090671 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10470569 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11127937 | 0.87[EUR][1000 genomes] |
| rs1170215 | 0.83[ASN][1000 genomes] |
| rs12492844 | 0.80[EUR][1000 genomes] |
| rs13059931 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1390422 | 0.83[ASN][1000 genomes] |
| rs1603322 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2201580 | 0.83[ASN][1000 genomes] |
| rs2669408 | 0.82[ASN][1000 genomes] |
| rs34391385 | 0.82[EUR][1000 genomes] |
| rs35318836 | 0.87[EUR][1000 genomes] |
| rs67481458 | 0.80[EUR][1000 genomes] |
| rs6796293 | 0.83[EUR][1000 genomes] |
| rs7623852 | 0.87[EUR][1000 genomes] |
| rs9876219 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9877726 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877115 | chr3:86278951-86554319 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv834753 | chr3:86386749-86546500 | Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
