Variant report

Variant	rs1496343
Chromosome Location	chr5:128151105-128151106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10058001	0.86[ASN][1000 genomes]
rs10064802	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10066695	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10073630	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10075560	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10478821	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11960334	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1390615	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1390616	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2106981	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36060890	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6595861	0.86[ASN][1000 genomes]
rs6867674	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6880387	0.81[AMR][1000 genomes]
rs9327489	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3392548	chr5:128139102-128159002	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128150200-128151400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:128150600-128151400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:128150600-128151600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:128150600-128151600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:128150600-128151600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:128150800-128151400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:128151000-128151200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:128151000-128151400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:128151000-128151400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:128151000-128151400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:128151000-128151400	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links