Variant report

Variant	rs1496715
Chromosome Location	chr15:93085141-93085142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11853057	0.91[ASN][1000 genomes]
rs11857335	1.00[ASN][1000 genomes]
rs12903400	0.84[AMR][1000 genomes]
rs1390789	1.00[ASN][1000 genomes]
rs1496714	1.00[ASN][1000 genomes]
rs1496716	1.00[ASN][1000 genomes]
rs1496718	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1496719	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16947001	0.91[ASN][1000 genomes]
rs2085269	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124360	0.91[ASN][1000 genomes]
rs2124362	0.91[ASN][1000 genomes]
rs28576919	0.91[ASN][1000 genomes]
rs28680286	1.00[ASN][1000 genomes]
rs28715191	1.00[ASN][1000 genomes]
rs55714577	1.00[ASN][1000 genomes]
rs62023191	0.91[ASN][1000 genomes]
rs62023195	1.00[ASN][1000 genomes]
rs7162155	0.91[ASN][1000 genomes]
rs7166289	0.91[ASN][1000 genomes]
rs7167538	0.91[ASN][1000 genomes]
rs7168428	0.91[ASN][1000 genomes]
rs7169349	0.91[ASN][1000 genomes]
rs7173352	0.91[ASN][1000 genomes]
rs7173925	0.91[ASN][1000 genomes]
rs7181381	0.91[ASN][1000 genomes]
rs7183230	0.91[ASN][1000 genomes]
rs7183912	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
5	esv2751542	chr15:93053681-93091815	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1496715	IQGAP1	cis	parietal	SCAN
rs1496715	CRTC3	cis	parietal	SCAN
rs1496715	PLIN1	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93084200-93085600	Enhancers	Fetal Lung	lung
2	chr15:93084200-93085800	Enhancers	HSMMtube	muscle
3	chr15:93084200-93086000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr15:93084400-93085200	Enhancers	Fetal Brain Male	brain
5	chr15:93084400-93085400	Enhancers	Fetal Muscle Leg	muscle
6	chr15:93084400-93085600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:93084600-93085200	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:93084600-93085400	Enhancers	NHEK	skin
9	chr15:93084600-93085600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:93084800-93085200	Enhancers	Lung	lung
11	chr15:93084800-93085200	Flanking Active TSS	HSMM	muscle
12	chr15:93084800-93085200	Enhancers	NHDF-Ad	bronchial
13	chr15:93084800-93085400	Enhancers	Left Ventricle	heart
14	chr15:93084800-93085600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:93084800-93085800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:93085000-93085200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr15:93085000-93085400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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