Variant report

Variant	rs149820342
Chromosome Location	chr6:34787959-34787960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr6:34787841-34788087	K562	blood:	n/a	n/a
2	CTCF	chr6:34787748-34788042	GM12878	blood:	n/a	chr6:34787912-34787928 chr6:34787906-34787927
3	TAL1	chr6:34787855-34787978	K562	blood:	n/a	n/a
4	CTCF	chr6:34787867-34787986	HUVEC	blood vessel:	n/a	chr6:34787912-34787928 chr6:34787906-34787927
5	TBL1XR1	chr6:34787782-34788188	K562	blood:	n/a	n/a
6	CTCF	chr6:34787844-34788043	K562	blood:	n/a	chr6:34787912-34787928 chr6:34787906-34787927

No.	Distal block	Cell Line	Cell type
1	chr6:34782930..34784591-chr6:34786044..34787965,3	K562	blood:
2	chr6:34780723..34782615-chr6:34786684..34789139,2	K562	blood:
3	chr6:34759673..34761787-chr6:34787706..34790146,2	MCF-7	breast:
4	chr6:34786614..34789043-chr6:34809197..34812183,2	K562	blood:
5	chr6:34758599..34760857-chr6:34787566..34790962,3	K562	blood:

Variant related genes	Relation type
ENSG00000206717	TF binding region
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv1016703	chr6:34784801-34827693	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
20	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34761400-34789400	Weak transcription	Fetal Stomach	stomach
2	chr6:34761400-34789400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:34761400-34790800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:34762000-34788400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:34764000-34803800	Weak transcription	HSMM	muscle
6	chr6:34772600-34789400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:34773200-34791400	Weak transcription	Gastric	stomach
8	chr6:34775400-34802400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:34776600-34789600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:34777800-34789000	Weak transcription	Primary T cells from cord blood	blood
11	chr6:34779200-34797000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:34779200-34807400	Weak transcription	A549	lung
13	chr6:34779400-34789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:34779400-34789400	Weak transcription	Hela-S3	cervix
15	chr6:34779400-34796400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:34779400-34841000	Weak transcription	NH-A	brain
17	chr6:34779600-34791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:34779600-34791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:34779600-34796200	Weak transcription	NHEK	skin
20	chr6:34779800-34789400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:34780800-34794000	Weak transcription	Aorta	Aorta
22	chr6:34781000-34790800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:34781000-34797000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:34781200-34789400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:34781400-34790800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:34781600-34788000	Weak transcription	HSMMtube	muscle
27	chr6:34781600-34791000	Weak transcription	Brain Anterior Caudate	brain
28	chr6:34781600-34791400	Weak transcription	Brain Substantia Nigra	brain
29	chr6:34781600-34824000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:34781800-34790600	Weak transcription	Brain Germinal Matrix	brain
31	chr6:34782600-34789400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:34782800-34790800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:34783200-34807400	Weak transcription	Psoas Muscle	Psoas
34	chr6:34784200-34789600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:34784600-34789400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:34784600-34789600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:34785200-34789400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:34785400-34789400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:34785400-34789400	Weak transcription	Fetal Brain Female	brain
40	chr6:34785400-34789400	Weak transcription	HepG2	liver
41	chr6:34785400-34789600	Weak transcription	Fetal Intestine Large	intestine
42	chr6:34785400-34790600	Weak transcription	Osteobl	bone
43	chr6:34785400-34790800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:34785600-34789000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:34785600-34789000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:34785600-34789400	Weak transcription	Stomach Mucosa	stomach
47	chr6:34785600-34802400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:34786400-34788000	Enhancers	GM12878-XiMat	blood
49	chr6:34786400-34788400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:34786400-34788600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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