Variant report

Variant	rs149831392
Chromosome Location	chr5:179868661-179868662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:179868564-179868939	HepG2	liver:	n/a	n/a
2	TCF7L2	chr5:179868476-179869047	Hela-S3	cervix:	n/a	n/a
3	MYC	chr5:179868395-179868974	MCF10A-Er-Src	breast:	n/a	n/a
4	EP300	chr5:179868415-179868939	Hela-S3	cervix:	n/a	n/a
5	STAT3	chr5:179868424-179868827	MCF10A-Er-Src	breast:	n/a	chr5:179868629-179868640
6	STAT3	chr5:179868325-179869001	MCF10A-Er-Src	breast:	n/a	chr5:179868629-179868640 chr5:179868912-179868924
7	MAZ	chr5:179868538-179868996	Hela-S3	cervix:	n/a	n/a
8	RAD21	chr5:179868490-179869007	Hela-S3	cervix:	n/a	chr5:179868902-179868912 chr5:179868902-179868914
9	FOS	chr5:179868399-179869000	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr5:179868606-179868934	HepG2	liver:	n/a	n/a
11	E2F4	chr5:179868503-179868945	MCF10A-Er-Src	breast:	n/a	n/a
12	SMARCB1	chr5:179868643-179869162	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr5:179868611-179868798	MCF10A-Er-Src	breast:	n/a	n/a
14	TCF7L2	chr5:179868567-179868928	HCT-116	colon:	n/a	n/a
15	MYC	chr5:179868415-179869039	MCF10A-Er-Src	breast:	n/a	n/a
16	GTF2F1	chr5:179868502-179869043	Hela-S3	cervix:	n/a	n/a
17	BCL3	chr5:179868437-179868959	A549	lung:	n/a	n/a
18	CEBPB	chr5:179868614-179868802	K562	blood:	n/a	n/a
19	SMARCC1	chr5:179868605-179869339	Hela-S3	cervix:	n/a	n/a
20	CHD2	chr5:179868545-179869128	Hela-S3	cervix:	n/a	n/a
21	USF2	chr5:179868505-179868886	Hela-S3	cervix:	n/a	n/a
22	EP300	chr5:179868435-179869042	A549	lung:	n/a	n/a
23	RCOR1	chr5:179868655-179868896	K562	blood:	n/a	n/a
24	MXI1	chr5:179868567-179868974	Hela-S3	cervix:	n/a	chr5:179868943-179868958
25	BRCA1	chr5:179868488-179868947	Hela-S3	cervix:	n/a	n/a
26	ZNF143	chr5:179868524-179868989	Hela-S3	cervix:	n/a	n/a
27	ZKSCAN1	chr5:179868514-179868998	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr5:179868644-179868876	H1-hESC	embryonic stem cell:	n/a	n/a
29	MAX	chr5:179868459-179869076	A549	lung:	n/a	n/a
30	TCF7L2	chr5:179868466-179869057	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr5:179868633-179869043	Hela-S3	cervix:	n/a	n/a
32	CEBPB	chr5:179868509-179869066	ECC-1	luminal epithelium:	n/a	n/a
33	CEBPB	chr5:179868475-179869025	A549	lung:	n/a	n/a
34	CEBPB	chr5:179868558-179868900	ECC-1	luminal epithelium:	n/a	n/a
35	FOS	chr5:179868378-179868958	MCF10A-Er-Src	breast:	n/a	n/a
36	STAT3	chr5:179868319-179869101	MCF10A-Er-Src	breast:	n/a	chr5:179868629-179868640 chr5:179868912-179868924
37	MAX	chr5:179868476-179869049	Hela-S3	cervix:	n/a	n/a
38	CREB1	chr5:179868595-179868944	A549	lung:	n/a	n/a
39	STAT3	chr5:179868412-179868922	Hela-S3	cervix:	n/a	chr5:179868629-179868640
40	RFX5	chr5:179868461-179869018	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr5:179868639-179868804	MCF10A-Er-Src	breast:	n/a	n/a
42	RCOR1	chr5:179868477-179868945	Hela-S3	cervix:	n/a	n/a
43	MYC	chr5:179868660-179868865	Hela-S3	cervix:	n/a	n/a
44	FOS	chr5:179868412-179868932	MCF10A-Er-Src	breast:	n/a	n/a
45	TBP	chr5:179868444-179869034	Hela-S3	cervix:	n/a	n/a
46	MAX	chr5:179868576-179869019	A549	lung:	n/a	n/a
47	CEBPB	chr5:179868503-179868981	A549	lung:	n/a	n/a
48	POLR2A	chr5:179868512-179869038	Hela-S3	cervix:	n/a	n/a
49	FOS	chr5:179868475-179868933	MCF10A-Er-Src	breast:	n/a	n/a
50	STAT3	chr5:179868329-179869050	MCF10A-Er-Src	breast:	n/a	chr5:179868629-179868640 chr5:179868912-179868924

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNOT6-2	chr5:179868559-179868855	XLOC_004679

Variant related genes	Relation type
RNU6-525P	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
4	nsv830563	chr5:179717693-179898609	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
8	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
9	nsv1023537	chr5:179791679-179982822	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv537985	chr5:179791679-179982822	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv1022818	chr5:179818116-179869311	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv537986	chr5:179818116-179869311	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv2752977	chr5:179860394-179885394	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1019519	chr5:179866730-179959408	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
15	nsv830564	chr5:179867394-180010096	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179866000-179869800	Enhancers	Placenta	Placenta
2	chr5:179867400-179868800	Weak transcription	Pancreas	Pancrea
3	chr5:179867600-179868800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:179867600-179868800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:179867600-179869000	Enhancers	HepG2	liver
6	chr5:179868400-179868800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:179868400-179869200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:179868400-179869200	Flanking Active TSS	Hela-S3	cervix
9	chr5:179868600-179869000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:179868600-179869000	Flanking Active TSS	A549	lung
11	chr5:179868600-179869200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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