Variant report

Variant	rs149839207
Chromosome Location	chr14:105779932-105779933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:105779910-105779960	SK-N-SH_RA	brain:	n/a
2	chr14:105779910-105779960	ProgFib	skin:	n/a
3	chr14:105779910-105779960	NB4	blood:	n/a
4	chr14:105779910-105779960	MCF-7	breast:	n/a
5	chr14:105779910-105779960	HPAEpiC	pulmonary alveolar:	n/a
6	chr14:105779910-105779960	BJ	skin:	n/a
7	chr14:105779910-105779960	AG04449	skin:	fetal
8	chr14:105779910-105779960	MCF10A-Er-Src	breast:	n/a
9	chr14:105779910-105779960	HRPEpiC	eye:	n/a
10	chr14:105779910-105779960	HNPCEpiC	eye:	n/a
11	chr14:105779910-105779960	Jurkat	blood:	n/a
12	chr14:105779910-105779960	AG10803	skin:	n/a
13	chr14:105779910-105779960	GM12892	blood:	n/a
14	chr14:105779910-105779960	AoSMC	blood vessel:	n/a
15	chr14:105779910-105779960	U87	brain:	n/a
16	chr14:105779910-105779960	CMK	blood:	n/a
17	chr14:105779910-105779960	PrEC	prostate:	n/a
18	chr14:105779910-105779960	GM12891	blood:	n/a
19	chr14:105779910-105779960	AG04450	lung:	fetal
20	chr14:105779910-105779960	HCT-116	colon:	n/a
21	chr14:105779910-105779960	HCF	heart:	n/a
22	chr14:105779910-105779960	NH-A	brain:	n/a
23	chr14:105779910-105779960	LNCaP	prostate:	n/a
24	chr14:105779910-105779960	IMR90	lung:	fetal
25	chr14:105779910-105779960	NT2-D1	testis:	n/a
26	chr14:105779910-105779960	HepG2	liver:	n/a
27	chr14:105779910-105779960	ovcar-3	ovarian:	n/a
28	chr14:105779910-105779960	SAEC	small airway:	n/a
29	chr14:105779910-105779960	Caco-2	colon:	n/a
30	chr14:105779910-105779960	HAEpiC	amniotic membrane:	n/a
31	chr14:105779910-105779960	A549	lung:	n/a
32	chr14:105779910-105779960	HRCEpiC	kidney:	n/a
33	chr14:105779910-105779960	GM19239	blood:	n/a
34	chr14:105779910-105779960	AG09309	skin:	n/a
35	chr14:105779910-105779960	HCM	heart:	n/a
36	chr14:105779910-105779960	HRE	kidney:	n/a
37	chr14:105779910-105779960	H1-hESC	embryonic stem cell:	embryo
38	chr14:105779910-105779960	HL-60	blood:	n/a
39	chr14:105779910-105779960	HEK293	kidney:	embryo
40	chr14:105779910-105779960	HIPEpiC	eye:	n/a
41	chr14:105779910-105779960	Hela-S3	cervix:	n/a
42	chr14:105779910-105779960	HMEC	breast:	n/a
43	chr14:105779910-105779960	SKMC	muscle:	n/a
44	chr14:105779910-105779960	SK-N-MC	brain:	n/a
45	chr14:105779910-105779960	Hepatocyte	liver:	n/a
46	chr14:105779910-105779960	T-47D	breast:	n/a
47	chr14:105779910-105779960	GM06990	blood:	n/a
48	chr14:105779910-105779960	HUVEC	blood vessel:	n/a
49	chr14:105779910-105779960	PFSK-1	brain:	n/a
50	chr14:105779910-105779960	HEEpiC	esophagus:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105778405..105782273-chr14:105864844..105868439,3	K562	blood:
2	chr14:105779526..105781902-chr14:105955293..105957927,2	MCF-7	breast:
3	chr14:105765307..105769571-chr14:105774220..105784135,13	K562	blood:
4	chr14:105765282..105769482-chr14:105778355..105784135,18	K562	blood:

No data

Variant related genes	Relation type
PACS2	CpG island
ENSG00000179364	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000226174	Chromatin interaction
ENSG00000185347	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
8	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv902441	chr14:105602619-105803170	Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv902442	chr14:105602619-105803170	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv1817919	chr14:105605199-105803170	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
14	nsv902466	chr14:105704465-105803170	Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
15	esv29986	chr14:105707292-105803170	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	nsv832887	chr14:105717339-105803170	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
17	nsv832888	chr14:105717339-105803170	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	nsv1052355	chr14:105718240-105789157	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
19	nsv566187	chr14:105756485-105780704	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
20	nsv566188	chr14:105771428-105780920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
21	nsv566190	chr14:105773028-105780983	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
22	nsv566191	chr14:105779305-105781428	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
23	esv1793985	chr14:105779305-105781605	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
24	esv1794181	chr14:105779305-105781605	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
25	esv1799551	chr14:105779305-105781605	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
26	nsv566192	chr14:105779305-105781605	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
27	esv1795042	chr14:105779305-105784680	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
28	esv1802313	chr14:105779305-105784680	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
29	esv1804257	chr14:105779305-105784680	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
30	esv1821473	chr14:105779305-105784680	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
31	esv1827230	chr14:105779305-105784680	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
32	esv1838589	chr14:105779305-105784680	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
33	esv1839784	chr14:105779305-105784680	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
34	esv1847835	chr14:105779305-105784680	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
35	nsv566193	chr14:105779305-105784680	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105768200-105780000	Weak transcription	NHDF-Ad	bronchial
2	chr14:105768200-105780200	Weak transcription	Gastric	stomach
3	chr14:105768200-105780200	Weak transcription	Right Atrium	heart
4	chr14:105768400-105780200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:105771400-105780200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:105771600-105780000	Weak transcription	K562	blood
7	chr14:105772200-105780000	Weak transcription	Primary T cells from cord blood	blood
8	chr14:105774200-105780000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:105774200-105780200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:105776000-105780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:105776000-105780000	Weak transcription	NHEK	skin
12	chr14:105776200-105780000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:105776200-105780000	Weak transcription	HMEC	breast
14	chr14:105778000-105780200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:105778000-105780200	Enhancers	Fetal Stomach	stomach
16	chr14:105778200-105780000	Enhancers	Fetal Muscle Leg	muscle
17	chr14:105778200-105780200	Enhancers	Fetal Muscle Trunk	muscle
18	chr14:105778400-105780200	Weak transcription	Right Ventricle	heart
19	chr14:105778600-105780000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:105778600-105780000	Enhancers	Brain Angular Gyrus	brain
21	chr14:105778600-105780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr14:105778800-105780200	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:105779000-105780000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:105779200-105780200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:105779200-105780600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr14:105779400-105780000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:105779400-105780000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:105779400-105780000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:105779400-105780000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr14:105779400-105780000	Enhancers	Thymus	Thymus
31	chr14:105779400-105780200	Enhancers	Placenta	Placenta
32	chr14:105779400-105780200	Enhancers	Fetal Thymus	thymus
33	chr14:105779400-105780400	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr14:105779400-105780400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr14:105779400-105780600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:105779400-105780600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:105779400-105780600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr14:105779400-105780600	Enhancers	Spleen	Spleen
39	chr14:105779600-105780000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr14:105779600-105780000	Enhancers	Muscle Satellite Cultured Cells	--
41	chr14:105779600-105780000	Enhancers	Adipose Nuclei	Adipose
42	chr14:105779600-105780000	Enhancers	Fetal Intestine Large	intestine
43	chr14:105779600-105780000	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr14:105779600-105780000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr14:105779600-105780000	Enhancers	GM12878-XiMat	blood
46	chr14:105779600-105780200	Enhancers	Primary B cells from peripheral blood	blood
47	chr14:105779600-105780200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:105779600-105780200	Enhancers	Colon Smooth Muscle	Colon
49	chr14:105779600-105780200	Enhancers	Esophagus	oesophagus
50	chr14:105779600-105780400	Flanking Active TSS	Brain Hippocampus Middle	brain

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