Variant report

Variant	rs149867659
Chromosome Location	chr15:74701428-74701429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74698106..74700226-chr15:74701422..74703511,2	MCF-7	breast:
2	chr15:74681656..74683846-chr15:74699710..74701534,2	K562	blood:
3	chr15:74687537..74689333-chr15:74700401..74702548,2	MCF-7	breast:
4	chr15:74700131..74703007-chr15:74725422..74727638,2	MCF-7	breast:
5	chr15:74699281..74701462-chr15:74703798..74706437,2	MCF-7	breast:
6	chr15:74698476..74700326-chr15:74700408..74702340,3	MCF-7	breast:
7	chr15:74694161..74696547-chr15:74701258..74703158,2	K562	blood:

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904353	chr15:74697084-74716609	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904354	chr15:74697084-74722924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
9	esv3331807	chr15:74701299-74703447	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74689400-74702400	Weak transcription	Gastric	stomach
2	chr15:74693600-74701600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:74696200-74702600	Weak transcription	Lung	lung
4	chr15:74696200-74710400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:74696200-74711400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:74696200-74712600	Weak transcription	Right Atrium	heart
7	chr15:74696400-74702400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:74696400-74707000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:74696400-74712200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:74696600-74703600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:74696600-74706200	Weak transcription	Primary T cells from cord blood	blood
12	chr15:74696800-74702600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:74696800-74709400	Weak transcription	Left Ventricle	heart
14	chr15:74697000-74702800	Weak transcription	Dnd41	blood
15	chr15:74697000-74705400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:74697000-74712400	Weak transcription	Fetal Heart	heart
17	chr15:74697000-74712600	Weak transcription	Fetal Lung	lung
18	chr15:74697200-74702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:74697200-74705200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:74697600-74701600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:74697800-74702000	Enhancers	NH-A	brain
22	chr15:74698000-74701600	Enhancers	Osteobl	bone
23	chr15:74698000-74701800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:74698000-74702000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:74698000-74702600	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr15:74698200-74704400	Weak transcription	Primary B cells from cord blood	blood
27	chr15:74698400-74702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:74698800-74701600	Enhancers	HSMMtube	muscle
29	chr15:74699000-74702400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:74699200-74701600	Enhancers	GM12878-XiMat	blood
31	chr15:74699600-74706200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:74699600-74716600	Weak transcription	Fetal Kidney	kidney
33	chr15:74699800-74701800	Enhancers	NHDF-Ad	bronchial
34	chr15:74699800-74702000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr15:74699800-74702400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:74699800-74702600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:74699800-74702600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:74699800-74704600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:74700000-74701600	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr15:74700000-74701800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:74700000-74702800	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:74700000-74713800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr15:74700200-74701600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:74700200-74701600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:74700200-74702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:74700200-74702400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:74700200-74702400	Weak transcription	Brain Anterior Caudate	brain
48	chr15:74700200-74703000	Weak transcription	HepG2	liver
49	chr15:74700200-74703400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:74700200-74704400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links