Variant report

Variant	rs1498722
Chromosome Location	chr3:134169643-134169644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12636917	0.91[ASN][1000 genomes]
rs1498719	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1498721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2102006	0.87[ASN][1000 genomes]
rs62271506	0.87[ASN][1000 genomes]
rs62271507	0.87[ASN][1000 genomes]
rs6804907	0.85[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134166000-134181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:134166600-134170600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:134166600-134170600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:134167200-134170400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:134167200-134181800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:134168600-134170200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:134168600-134170600	Weak transcription	Osteobl	bone
8	chr3:134168800-134170400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:134168800-134170600	Weak transcription	Spleen	Spleen
10	chr3:134168800-134176400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:134168800-134176600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:134168800-134176600	Weak transcription	Right Atrium	heart
13	chr3:134169000-134183600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:134169200-134178600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:134169200-134180400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:134169400-134170000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr3:134169400-134170600	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links