Variant report

Variant	rs1498831
Chromosome Location	chr4:54711794-54711795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1391764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17083589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17083604	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57221039	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57537230	1.00[AMR][1000 genomes]
rs59962691	1.00[AMR][1000 genomes]
rs61293289	1.00[AMR][1000 genomes]
rs73143825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143867	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73143872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73817034	1.00[AMR][1000 genomes]
rs73817119	1.00[AMR][1000 genomes]
rs73817163	1.00[AMR][1000 genomes]
rs73818151	1.00[AMR][1000 genomes]
rs73818152	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014792	chr4:54655382-54768963	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537095	chr4:54655382-54768963	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879017	chr4:54656948-54784205	Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54710200-54711800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:54710600-54717800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:54710800-54713200	Weak transcription	Fetal Lung	lung
4	chr4:54711000-54711800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:54711000-54725400	Weak transcription	Psoas Muscle	Psoas
6	chr4:54711200-54716200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:54711400-54712200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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