Variant report

Variant	rs1498858
Chromosome Location	chr3:69631756-69631757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1121758	0.86[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1121760	0.82[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1603835	0.86[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2556381	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs288492	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288494	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288496	0.82[ASN][1000 genomes]
rs288497	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288499	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288500	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs288502	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs288503	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs288511	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288512	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs288513	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs288514	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4855416	0.85[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4855421	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6549239	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs736333	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs748178	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7625737	0.86[CEU][hapmap];0.96[YRI][hapmap]
rs7647307	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs92481	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1004470	chr3:69597148-69728231	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1015103	chr3:69619879-69712504	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69631000-69632000	Weak transcription	Fetal Lung	lung

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