Variant report

Variant	rs149953506
Chromosome Location	chr3:23527681-23527682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23526588..23528958-chr3:23530661..23532883,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007373	chr3:23367952-23710331	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	esv3434857	chr3:23527314-23531055	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23521000-23531800	Weak transcription	NHDF-Ad	bronchial
2	chr3:23521600-23532000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:23521800-23528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:23522000-23527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:23522000-23531000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:23522000-23531200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:23522200-23527800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:23522200-23528000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:23523000-23530800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:23523200-23536800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:23523400-23531000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:23523600-23528000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:23523600-23542400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:23524000-23534800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:23524800-23531000	Weak transcription	Psoas Muscle	Psoas
16	chr3:23526000-23528200	Weak transcription	Fetal Heart	heart
17	chr3:23526000-23532000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:23526600-23554000	Weak transcription	Primary T cells from cord blood	blood
19	chr3:23527200-23528000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr3:23527200-23528600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
21	chr3:23527400-23527800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:23527400-23528000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:23527400-23528000	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr3:23527400-23528600	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr3:23527400-23528600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr3:23527400-23528800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:23527400-23528800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:23527400-23528800	Enhancers	Left Ventricle	heart
29	chr3:23527400-23528800	ZNF genes & repeats	Lung	lung
30	chr3:23527400-23528800	ZNF genes & repeats	Right Atrium	heart
31	chr3:23527400-23528800	ZNF genes & repeats	Thymus	Thymus
32	chr3:23527400-23529000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:23527400-23529000	ZNF genes & repeats	Fetal Stomach	stomach
34	chr3:23527600-23527800	ZNF genes & repeats	Aorta	Aorta
35	chr3:23527600-23527800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
36	chr3:23527600-23527800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr3:23527600-23528000	Enhancers	Right Ventricle	heart
38	chr3:23527600-23528200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr3:23527600-23528400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
40	chr3:23527600-23528800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr3:23527600-23528800	ZNF genes & repeats	Fetal Thymus	thymus
42	chr3:23527600-23528800	ZNF genes & repeats	Spleen	Spleen
43	chr3:23527600-23529400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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