Variant report

Variant	rs149965135
Chromosome Location	chr13:49635493-49635494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49548698..49552354-chr13:49633913..49636847,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102531	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv455882	chr13:49531551-49679157	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv561593	chr13:49531551-49679157	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv1803100	chr13:49576474-49655941	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3407529	chr13:49634576-49637124	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3447421	chr13:49634601-49637099	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49551400-49638800	Weak transcription	Pancreas	Pancrea
2	chr13:49582200-49659000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr13:49584200-49649200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr13:49592800-49649600	Weak transcription	Fetal Intestine Large	intestine
5	chr13:49594800-49636000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr13:49598000-49650200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr13:49599000-49649200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr13:49601800-49660600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:49603200-49649200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr13:49603200-49652200	Weak transcription	Dnd41	blood
11	chr13:49604800-49636400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:49605200-49643400	Weak transcription	HSMM	muscle
13	chr13:49608800-49638800	Weak transcription	Ovary	ovary
14	chr13:49608800-49658800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr13:49618600-49636000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:49620600-49636200	Weak transcription	Primary T cells from cord blood	blood
17	chr13:49625600-49636600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:49625600-49642600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:49626000-49636200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:49626200-49650200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr13:49627200-49636800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr13:49627200-49656800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:49627400-49635600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr13:49627400-49638600	Weak transcription	Left Ventricle	heart
25	chr13:49627400-49656800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:49627400-49672400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr13:49628200-49636800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr13:49628200-49639000	Weak transcription	Colon Smooth Muscle	Colon
29	chr13:49628600-49656600	Weak transcription	Thymus	Thymus
30	chr13:49628800-49638800	Weak transcription	Primary B cells from cord blood	blood
31	chr13:49628800-49657000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr13:49629000-49635600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr13:49629000-49665600	Weak transcription	Lung	lung
34	chr13:49629200-49650200	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:49629600-49649400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr13:49629600-49650000	Weak transcription	Fetal Stomach	stomach
37	chr13:49629600-49665400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:49630000-49650600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr13:49630200-49642800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr13:49630200-49656800	Weak transcription	Aorta	Aorta
41	chr13:49630400-49664000	Weak transcription	Fetal Intestine Small	intestine
42	chr13:49630600-49636400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr13:49630800-49636000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr13:49632200-49664800	Weak transcription	Fetal Lung	lung
45	chr13:49632400-49636000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr13:49632800-49640400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr13:49633000-49636200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr13:49633200-49637200	Weak transcription	GM12878-XiMat	blood
49	chr13:49633400-49636200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:49634000-49637600	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links