Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR125-1	chr4:22346780-22346968	XLOC_003904

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10010581	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10031374	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12498851	0.88[ASN][1000 genomes]
rs12511208	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13104119	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13109231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13111654	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114428	0.90[ASN][1000 genomes]
rs13124084	0.97[ASN][1000 genomes]
rs1500465	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1587491	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1587492	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1827239	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1827240	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1983021	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2202025	0.88[EUR][1000 genomes]
rs36079959	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4697293	0.87[EUR][1000 genomes]
rs56717131	0.88[ASN][1000 genomes]
rs6448153	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7683451	0.80[ASN][1000 genomes]
rs9684289	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22329000-22389400	Weak transcription	Pancreas	Pancrea
2	chr4:22329800-22349800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:22332200-22349800	Weak transcription	Liver	Liver
4	chr4:22336600-22385400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:22341200-22351400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:22343000-22355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:22346600-22347200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr4:22346600-22347600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:22346600-22348000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:22346600-22348200	Enhancers	Brain Substantia Nigra	brain
11	chr4:22346800-22347000	Enhancers	Brain Hippocampus Middle	brain

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