Variant report

Variant	rs150085851
Chromosome Location	chr3:136019109-136019110
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136014329..136016765-chr3:136018806..136021350,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3354523	chr3:136016462-136020760	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv4025	chr3:136017458-136065622	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv3461178	chr3:136019062-136028160	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:135976200-136021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:135981200-136052000	Weak transcription	NH-A	brain
4	chr3:135981600-136020400	Weak transcription	HUVEC	blood vessel
5	chr3:135998000-136040200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:135999800-136038200	Weak transcription	Fetal Brain Male	brain
7	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
8	chr3:136000000-136024600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:136000200-136038200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:136001200-136019200	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:136004600-136021400	Weak transcription	HMEC	breast
12	chr3:136004600-136022000	Weak transcription	NHDF-Ad	bronchial
13	chr3:136005200-136019200	Weak transcription	Osteobl	bone
14	chr3:136009400-136023000	Strong transcription	Dnd41	blood
15	chr3:136010000-136021000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:136010000-136021000	Strong transcription	Liver	Liver
17	chr3:136010200-136021200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:136010400-136021000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:136010400-136021000	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:136010400-136021000	Strong transcription	Fetal Stomach	stomach
21	chr3:136010600-136031400	Weak transcription	Stomach Mucosa	stomach
22	chr3:136010800-136020600	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:136011000-136024600	Weak transcription	Psoas Muscle	Psoas
24	chr3:136011200-136020800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:136011800-136020600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:136011800-136021000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:136012000-136020800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:136012000-136020800	Strong transcription	Adipose Nuclei	Adipose
29	chr3:136012000-136021200	Strong transcription	Brain Substantia Nigra	brain
30	chr3:136012200-136020600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:136012200-136020600	Strong transcription	Brain Cingulate Gyrus	brain
32	chr3:136012200-136021000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:136012200-136021200	Strong transcription	Brain Hippocampus Middle	brain
34	chr3:136012200-136021200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr3:136012400-136020800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr3:136012400-136021200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr3:136012600-136020600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:136012600-136020800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:136012600-136020800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr3:136012600-136021000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:136012600-136024800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr3:136012800-136019800	Weak transcription	HSMMtube	muscle
43	chr3:136013600-136019800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:136013600-136020600	Strong transcription	Primary B cells from cord blood	blood
45	chr3:136013600-136020600	Strong transcription	Fetal Brain Female	brain
46	chr3:136013600-136022000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr3:136014000-136020800	Strong transcription	K562	blood
48	chr3:136014200-136040000	Weak transcription	Small Intestine	intestine
49	chr3:136014600-136021000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:136015000-136038800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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