Variant report

Variant	rs150144
Chromosome Location	chr6:118529031-118529032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1034247	0.98[EUR][1000 genomes]
rs1889465	0.98[EUR][1000 genomes]
rs1889466	0.98[EUR][1000 genomes]
rs1931976	0.98[EUR][1000 genomes]
rs2050312	0.98[EUR][1000 genomes]
rs2050313	0.95[EUR][1000 genomes]
rs205917	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs205918	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs205919	0.98[EUR][1000 genomes]
rs205920	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs205921	0.81[EUR][1000 genomes]
rs205922	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs205923	1.00[EUR][1000 genomes]
rs2095406	0.98[EUR][1000 genomes]
rs2105021	0.98[EUR][1000 genomes]
rs2184365	0.98[EUR][1000 genomes]
rs2883847	0.98[EUR][1000 genomes]
rs2883848	0.98[EUR][1000 genomes]
rs4245500	0.96[EUR][1000 genomes]
rs455227	0.98[EUR][1000 genomes]
rs455338	0.98[EUR][1000 genomes]
rs457162	0.98[EUR][1000 genomes]
rs457210	0.98[EUR][1000 genomes]
rs458588	0.98[EUR][1000 genomes]
rs460399	0.98[EUR][1000 genomes]
rs465226	0.98[EUR][1000 genomes]
rs4945614	0.98[EUR][1000 genomes]
rs4945615	0.98[EUR][1000 genomes]
rs4945617	0.98[EUR][1000 genomes]
rs4946328	0.98[EUR][1000 genomes]
rs6911094	0.98[EUR][1000 genomes]
rs6917963	0.98[EUR][1000 genomes]
rs6921633	0.98[EUR][1000 genomes]
rs6921657	0.98[EUR][1000 genomes]
rs6933344	0.96[EUR][1000 genomes]
rs7748215	0.98[EUR][1000 genomes]
rs7768436	0.98[EUR][1000 genomes]
rs9320645	0.98[EUR][1000 genomes]
rs9481771	0.90[EUR][1000 genomes]
rs9481772	0.98[EUR][1000 genomes]
rs9489323	0.98[EUR][1000 genomes]
rs9489324	0.98[EUR][1000 genomes]
rs980916	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118525600-118529400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:118526800-118532400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118528600-118529400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:118528800-118531400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:118529000-118529200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:118529000-118531200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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