Variant report

Variant	rs150212988
Chromosome Location	chr3:178919596-178919597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178864948..178867873-chr3:178918909..178920494,2	MCF-7	breast:
2	chr3:178918266..178919818-chr3:178962428..178965232,2	MCF-7	breast:
3	chr3:178910913..178913212-chr3:178917675..178920478,2	K562	blood:

Variant related genes	Relation type
ENSG00000121879	Chromatin interaction
ENSG00000229102	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv1007496	chr3:178919237-178920198	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178899200-178951800	Weak transcription	K562	blood
2	chr3:178900000-178929800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:178906400-178962400	Weak transcription	HepG2	liver
4	chr3:178908000-178919800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:178908000-178923600	Weak transcription	Fetal Brain Female	brain
6	chr3:178908800-178920000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:178908800-178922800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:178909000-178919800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:178909000-178931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:178909000-178947000	Weak transcription	Ovary	ovary
11	chr3:178909400-178925400	Weak transcription	Aorta	Aorta
12	chr3:178911000-178919600	Weak transcription	Placenta	Placenta
13	chr3:178911200-178953400	Weak transcription	Gastric	stomach
14	chr3:178912400-178919600	Weak transcription	Spleen	Spleen
15	chr3:178912400-178924000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:178912400-178978600	Weak transcription	Right Ventricle	heart
17	chr3:178912600-178919600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:178912600-178947800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:178913000-178919600	Weak transcription	Fetal Intestine Large	intestine
20	chr3:178913000-178925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:178913000-178925400	Weak transcription	Pancreas	Pancrea
22	chr3:178913000-178930800	Weak transcription	Left Ventricle	heart
23	chr3:178913000-178948200	Weak transcription	Psoas Muscle	Psoas
24	chr3:178913200-178945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:178913200-178947000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:178913200-178947000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:178913800-178919600	Weak transcription	Brain Germinal Matrix	brain
28	chr3:178913800-178954000	Weak transcription	Fetal Heart	heart
29	chr3:178913800-178969000	Weak transcription	Small Intestine	intestine
30	chr3:178914000-178919600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:178914000-178919600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr3:178914000-178921400	Weak transcription	Fetal Kidney	kidney
33	chr3:178914000-178928200	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:178914200-178928000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:178914200-178928000	Weak transcription	Brain Substantia Nigra	brain
36	chr3:178914200-178928200	Weak transcription	Brain Anterior Caudate	brain
37	chr3:178914600-178919600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:178914600-178920200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:178914600-178921400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr3:178914600-178945200	Weak transcription	HMEC	breast
41	chr3:178914800-178919600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:178914800-178919600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:178914800-178919600	Weak transcription	Thymus	Thymus
44	chr3:178914800-178919600	Weak transcription	NHLF	lung
45	chr3:178914800-178919800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:178914800-178921800	Weak transcription	Fetal Brain Male	brain
47	chr3:178914800-178922000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:178914800-178926400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:178914800-178927200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:178914800-178927800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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