Variant report

Variant	rs150248647
Chromosome Location	chr6:29429370-29429371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29429346-29429396	MCF-7	breast:	n/a
2	chr6:29429346-29429396	ProgFib	skin:	n/a
3	chr6:29429346-29429396	NB4	blood:	n/a
4	chr6:29429346-29429396	GM12878	blood:	n/a
5	chr6:29429346-29429396	LNCaP	prostate:	n/a
6	chr6:29429346-29429396	HIPEpiC	eye:	n/a
7	chr6:29429346-29429396	AG04449	skin:	fetal
8	chr6:29429346-29429396	HMEC	breast:	n/a
9	chr6:29429346-29429396	HUVEC	blood vessel:	n/a
10	chr6:29429346-29429396	HCPEpiC	choroid plexus:	n/a
11	chr6:29429346-29429396	GM12892	blood:	n/a
12	chr6:29429346-29429396	IMR90	lung:	fetal
13	chr6:29429346-29429396	HCM	heart:	n/a
14	chr6:29429346-29429396	NH-A	brain:	n/a
15	chr6:29429346-29429396	HL-60	blood:	n/a
16	chr6:29429346-29429396	ECC-1	luminal epithelium:	n/a
17	chr6:29429346-29429396	Caco-2	colon:	n/a
18	chr6:29429346-29429396	HEK293	kidney:	embryo
19	chr6:29429346-29429396	SK-N-SH_RA	brain:	n/a
20	chr6:29429346-29429396	GM06990	blood:	n/a
21	chr6:29429346-29429396	Hepatocyte	liver:	n/a
22	chr6:29429346-29429396	GM12891	blood:	n/a
23	chr6:29429346-29429396	T-47D	breast:	n/a
24	chr6:29429346-29429396	MCF10A-Er-Src	breast:	n/a
25	chr6:29429346-29429396	U87	brain:	n/a
26	chr6:29429346-29429396	HNPCEpiC	eye:	n/a
27	chr6:29429346-29429396	SK-N-SH	brain:	n/a
28	chr6:29429346-29429396	PANC-1	pancreas:	n/a
29	chr6:29429346-29429396	HRPEpiC	eye:	n/a
30	chr6:29429346-29429396	NHBE	bronchial:	n/a
31	chr6:29429346-29429396	SAEC	small airway:	n/a
32	chr6:29429346-29429396	Jurkat	blood:	n/a
33	chr6:29429346-29429396	BJ	skin:	n/a
34	chr6:29429346-29429396	HRE	kidney:	n/a
35	chr6:29429346-29429396	RPTEC	kidney:	n/a
36	chr6:29429346-29429396	PrEC	prostate:	n/a
37	chr6:29429346-29429396	BE2_C	brain:	n/a
38	chr6:29429346-29429396	HAEpiC	amniotic membrane:	n/a
39	chr6:29429346-29429396	AG09309	skin:	n/a
40	chr6:29429346-29429396	AG09319	gingival:	n/a
41	chr6:29429346-29429396	CMK	blood:	n/a
42	chr6:29429346-29429396	H1-hESC	embryonic stem cell:	embryo
43	chr6:29429346-29429396	HCF	heart:	n/a
44	chr6:29429346-29429396	PFSK-1	brain:	n/a
45	chr6:29429346-29429396	AG10803	skin:	n/a
46	chr6:29429346-29429396	SKMC	muscle:	n/a
47	chr6:29429346-29429396	ovcar-3	ovarian:	n/a
48	chr6:29429346-29429396	Hela-S3	cervix:	n/a
49	chr6:29429346-29429396	HCT-116	colon:	n/a
50	chr6:29429346-29429396	K562	blood:	n/a

No data

Variant related genes	Relation type
OR11A1	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv969371	chr6:29429364-29430560	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29429200-29429400	Enhancers	Stomach Mucosa	stomach
2	chr6:29429200-29430000	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links