Variant report

Variant	rs1502851
Chromosome Location	chr5:101864034-101864035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1027662	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1027663	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1155978	0.80[EUR][1000 genomes]
rs1156920	0.80[EUR][1000 genomes]
rs1160116	0.80[EUR][1000 genomes]
rs1394819	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1394822	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1502839	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1502844	0.88[AFR][1000 genomes]
rs1505415	0.80[EUR][1000 genomes]
rs1505418	0.80[EUR][1000 genomes]
rs1875632	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1875634	0.81[AFR][1000 genomes]
rs2134452	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3105231	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3105476	0.80[EUR][1000 genomes]
rs3105479	0.80[EUR][1000 genomes]
rs3105481	0.80[EUR][1000 genomes]
rs3114600	0.80[EUR][1000 genomes]
rs35506458	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6596501	0.87[AFR][1000 genomes]
rs6866255	0.82[AFR][1000 genomes]
rs6872759	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9327862	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs982094	0.80[EUR][1000 genomes]
rs997999	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv830428	chr5:101797242-101958791	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1022583	chr5:101829366-101899242	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1033193	chr5:101859229-102420837	Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101863400-101885600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:101863600-101864600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:101863600-101864600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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