Variant report

Variant	rs150299291
Chromosome Location	chr11:8955348-8955349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv8787	chr11:8954949-8959098	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8941200-8956200	Weak transcription	K562	blood
2	chr11:8942400-8959000	Weak transcription	Fetal Kidney	kidney
3	chr11:8943800-8969200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:8944200-8956400	Weak transcription	HUVEC	blood vessel
5	chr11:8944600-8985000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8944800-8956400	Weak transcription	Fetal Intestine Large	intestine
7	chr11:8945000-8956200	Weak transcription	NH-A	brain
8	chr11:8945200-8956200	Weak transcription	A549	lung
9	chr11:8945800-8974000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:8946400-8956200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:8947000-8968800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:8947000-8977000	Weak transcription	Aorta	Aorta
13	chr11:8947200-8956400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:8947400-8956200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:8947400-8969000	Weak transcription	Thymus	Thymus
16	chr11:8947600-8956200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:8947600-8956400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:8947600-8969000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:8948000-8955600	Weak transcription	NHLF	lung
20	chr11:8948200-8969000	Weak transcription	Fetal Brain Female	brain
21	chr11:8948600-8969200	Weak transcription	Gastric	stomach
22	chr11:8948600-8969200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:8951000-8956200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:8951200-8956200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:8951200-8974400	Weak transcription	HepG2	liver
26	chr11:8952600-8956200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:8952600-8957200	Weak transcription	Spleen	Spleen
28	chr11:8952600-8975800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:8952800-8956200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:8952800-8956200	Weak transcription	HSMM	muscle
31	chr11:8952800-8956200	Weak transcription	Osteobl	bone
32	chr11:8952800-8968600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:8953000-8956200	Weak transcription	NHDF-Ad	bronchial
34	chr11:8953000-8956400	Weak transcription	HSMMtube	muscle
35	chr11:8953400-8955600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:8953600-8955400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:8953600-8955800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr11:8953600-8955800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:8953800-8955400	Enhancers	Fetal Muscle Trunk	muscle
40	chr11:8954000-8956400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:8954200-8956000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:8954400-8984400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:8954600-8955600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:8954600-8955600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:8954600-8956600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:8954800-8955600	Enhancers	NHEK	skin
47	chr11:8954800-8956200	Enhancers	Hela-S3	cervix
48	chr11:8954800-8956400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:8954800-8956400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:8955000-8955600	Enhancers	HUES48 Cell Line	embryonic stem cell

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