Variant report

Variant	rs150309123
Chromosome Location	chr5:126732623-126732624
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126732318..126732969-chr5:126828411..126828936,2	MCF-7	breast:
2	chr5:126732573..126736586-chr5:126737004..126738980,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1032587	chr5:126691103-126826978	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830478	chr5:126721368-126937408	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv526333	chr5:126732427-126746277	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126691000-126746000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:126710200-126741200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:126712800-126734200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:126720000-126742000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:126722800-126736000	Weak transcription	HSMM	muscle
6	chr5:126730800-126734400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:126731000-126734400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:126731600-126732800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:126731600-126733800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:126731600-126735000	Enhancers	Brain Hippocampus Middle	brain
11	chr5:126731800-126733000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:126731800-126733000	Strong transcription	Fetal Muscle Leg	muscle
13	chr5:126731800-126735000	Genic enhancers	Brain Substantia Nigra	brain
14	chr5:126731800-126741800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:126731800-126742000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:126732000-126734400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:126732000-126735200	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:126732000-126741200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:126732200-126732800	Strong transcription	HSMMtube	muscle
20	chr5:126732400-126732800	Genic enhancers	Brain Anterior Caudate	brain
21	chr5:126732400-126734200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:126732400-126734800	Enhancers	Brain Cingulate Gyrus	brain
23	chr5:126732400-126741600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:126732600-126732800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:126732600-126732800	Genic enhancers	Brain Angular Gyrus	brain
26	chr5:126732600-126741800	Weak transcription	H1 Cell Line	embryonic stem cell

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