Variant report

Variant	rs150341436
Chromosome Location	chr2:208994956-208994957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr2:208994768-208995160	MCF10A-Er-Src	breast:	n/a	chr2:208994855-208994866 chr2:208994857-208994865
2	HNF4A	chr2:208994936-208995463	HepG2	liver:	n/a	chr2:208994998-208995006 chr2:208995264-208995279
3	FOS	chr2:208994770-208995100	MCF10A-Er-Src	breast:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994933-208994941
4	GATA3	chr2:208994494-208995408	SK-N-SH	brain:	n/a	chr2:208995025-208995032 chr2:208995025-208995032 chr2:208995021-208995037 chr2:208995018-208995039 chr2:208995024-208995032 chr2:208995025-208995032
5	EP300	chr2:208994709-208995183	SK-N-SH_RA	brain:	n/a	n/a
6	STAT3	chr2:208994949-208995071	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr2:208994681-208995107	SK-N-SH	brain:	n/a	n/a
8	SP1	chr2:208994792-208995517	HepG2	liver:	n/a	n/a
9	JUND	chr2:208994740-208995168	Hela-S3	cervix:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994931-208994942 chr2:208994933-208994941
10	MYC	chr2:208994847-208995044	MCF10A-Er-Src	breast:	n/a	chr2:208994933-208994942
11	TEAD4	chr2:208994385-208995580	HepG2	liver:	n/a	n/a
12	GATA3	chr2:208994703-208995339	MCF-7	breast:	n/a	chr2:208995025-208995032 chr2:208995025-208995032 chr2:208995021-208995037 chr2:208995018-208995039 chr2:208995024-208995032 chr2:208995025-208995032
13	FOS	chr2:208994771-208995097	MCF10A-Er-Src	breast:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994933-208994941
14	JUND	chr2:208994631-208995252	SK-N-SH	brain:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994931-208994942 chr2:208994933-208994941
15	JUND	chr2:208994667-208995276	SK-N-SH	brain:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994931-208994942 chr2:208994933-208994941
16	ARID3A	chr2:208994943-208995512	HepG2	liver:	n/a	n/a
17	GATA3	chr2:208994694-208995409	MCF-7	breast:	n/a	chr2:208995025-208995032 chr2:208995025-208995032 chr2:208995021-208995037 chr2:208995018-208995039 chr2:208995024-208995032 chr2:208995025-208995032
18	MYBL2	chr2:208994782-208995720	HepG2	liver:	n/a	n/a
19	FOS	chr2:208994805-208995081	MCF10A-Er-Src	breast:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994933-208994941
20	RXRA	chr2:208994468-208995175	SK-N-SH	brain:	n/a	n/a
21	KAP1	chr2:208994621-208995421	U2OS	brain:	n/a	n/a
22	TCF12	chr2:208994726-208995231	SK-N-SH	brain:	n/a	n/a
23	EP300	chr2:208994855-208995453	HepG2	liver:	n/a	n/a
24	CEBPB	chr2:208994773-208995164	Hela-S3	cervix:	n/a	chr2:208994983-208994994
25	EP300	chr2:208994656-208995194	SK-N-SH_RA	brain:	n/a	n/a
26	EP300	chr2:208994773-208995082	Hela-S3	cervix:	n/a	n/a
27	HDAC2	chr2:208994881-208995431	HepG2	liver:	n/a	n/a
28	RAD21	chr2:208994741-208995112	SK-N-SH_RA	brain:	n/a	n/a
29	EP300	chr2:208994534-208995224	SK-N-SH	brain:	n/a	n/a
30	PBX3	chr2:208994623-208995248	SK-N-SH	brain:	n/a	n/a
31	GATA3	chr2:208994411-208995438	SK-N-SH	brain:	n/a	chr2:208995025-208995032 chr2:208995025-208995032 chr2:208995021-208995037 chr2:208995018-208995039 chr2:208995024-208995032 chr2:208995025-208995032
32	TCF12	chr2:208994598-208995349	SK-N-SH	brain:	n/a	n/a
33	MBD4	chr2:208994820-208995538	HepG2	liver:	n/a	n/a
34	STAT3	chr2:208994710-208994998	MCF10A-Er-Src	breast:	n/a	chr2:208994855-208994866 chr2:208994857-208994865
35	KAP1	chr2:208994852-208995365	HEK293	kidney:	n/a	n/a
36	REST	chr2:208994751-208995008	SK-N-SH	brain:	n/a	n/a
37	FOSL2	chr2:208994742-208995467	HepG2	liver:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994933-208994941
38	MBD4	chr2:208994716-208995528	HepG2	liver:	n/a	n/a
39	EP300	chr2:208994812-208995492	HepG2	liver:	n/a	n/a
40	PBX3	chr2:208994644-208995291	SK-N-SH	brain:	n/a	n/a
41	NFIC	chr2:208994668-208995461	HepG2	liver:	n/a	n/a
42	JUND	chr2:208994815-208995089	HepG2	liver:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994931-208994942 chr2:208994933-208994941
43	GATA2	chr2:208994417-208995366	SH-SY5Y	brain:	n/a	chr2:208995025-208995032 chr2:208995025-208995032 chr2:208995021-208995037 chr2:208995018-208995039 chr2:208995025-208995032
44	RCOR1	chr2:208994866-208995350	HepG2	liver:	n/a	n/a
45	HNF4A	chr2:208994777-208995523	HepG2	liver:	n/a	chr2:208994998-208995006 chr2:208995264-208995279 chr2:208994795-208994810 chr2:208994796-208994810 chr2:208994796-208994808 chr2:208994796-208994811
46	MYBL2	chr2:208994784-208995632	HepG2	liver:	n/a	n/a
47	FOSL2	chr2:208994627-208995199	SK-N-SH	brain:	n/a	chr2:208994932-208994942 chr2:208994932-208994942 chr2:208994933-208994941
48	STAT3	chr2:208994819-208995031	MCF10A-Er-Src	breast:	n/a	chr2:208994855-208994866 chr2:208994857-208994865
49	GATA3	chr2:208994893-208995218	MCF-7	breast:	n/a	chr2:208995025-208995032 chr2:208995025-208995032 chr2:208995021-208995037 chr2:208995018-208995039 chr2:208995024-208995032 chr2:208995025-208995032
50	HNF4G	chr2:208994834-208995449	HepG2	liver:	n/a	chr2:208994998-208995006

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:208989109..208991585-chr2:208994453..208996077,2	K562	blood:
2	chr2:47433190..47433692-chr2:208994565..208995065,2	MCF-7	breast:

Variant related genes	Relation type
CRYGC	TF binding region
ENSG00000118231	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875747	chr2:208990345-209042963	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv875748	chr2:208994399-209033557	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208989400-208999800	Weak transcription	Pancreas	Pancrea
2	chr2:208990400-208995000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:208993400-209002200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:208994000-208998400	Enhancers	Fetal Intestine Large	intestine
5	chr2:208994200-208995200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:208994200-208995400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:208994200-208995400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr2:208994200-208996200	Enhancers	Duodenum Mucosa	Duodenum
9	chr2:208994200-208997000	Enhancers	HMEC	breast
10	chr2:208994200-208998400	Enhancers	Fetal Intestine Small	intestine
11	chr2:208994400-208995200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:208994400-208995400	Enhancers	Placenta	Placenta
13	chr2:208994400-208995800	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr2:208994600-208995200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:208994600-208995200	Enhancers	NH-A	brain
16	chr2:208994600-208995400	Enhancers	NHEK	skin
17	chr2:208994600-208995600	Flanking Active TSS	HepG2	liver
18	chr2:208994600-208995800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr2:208994600-208996000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr2:208994600-208996200	Enhancers	Hela-S3	cervix
21	chr2:208994600-208999600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:208994600-209002200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:208994800-208996000	Enhancers	Stomach Mucosa	stomach

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