Variant report

Variant	rs1503505
Chromosome Location	chr11:19048033-19048034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10766523	0.82[AMR][1000 genomes]
rs10833043	0.82[AMR][1000 genomes]
rs11024922	0.89[ASN][1000 genomes]
rs12226376	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12292312	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418819	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1471669	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1825293	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1842920	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1842925	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1872022	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2403350	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2403351	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2403358	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35974515	0.90[ASN][1000 genomes]
rs4756977	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757742	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6483560	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6483561	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6483564	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7112276	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7116303	0.86[CEU][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129241	0.89[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs922891	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs986899	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv870101	chr11:19037931-19093952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19045600-19048400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:19046400-19048800	Enhancers	Fetal Heart	heart
3	chr11:19046600-19050600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:19046800-19048200	Enhancers	Brain Germinal Matrix	brain
5	chr11:19047200-19048800	Enhancers	NHDF-Ad	bronchial
6	chr11:19047200-19050000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:19047600-19048800	Enhancers	Left Ventricle	heart
8	chr11:19047800-19048600	Enhancers	Stomach Mucosa	stomach
9	chr11:19048000-19048400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:19048000-19048800	Enhancers	Right Atrium	heart
11	chr11:19048000-19049400	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links