Variant report

Variant	rs150366990
Chromosome Location	chr11:73359869-73359870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZEB1	chr11:73358380-73360542	HepG2	liver:	n/a	chr11:73358908-73358917 chr11:73358906-73358917
2	CHD2	chr11:73359738-73360006	HepG2	liver:	n/a	n/a
3	MYC	chr11:73359819-73360034	HepG2	liver:	n/a	n/a
4	FOXA1	chr11:73359712-73360195	HepG2	liver:	n/a	n/a
5	POLR2A	chr11:73359599-73360137	HepG2	liver:	n/a	n/a
6	HEY1	chr11:73359593-73360091	HepG2	liver:	n/a	n/a
7	FOXA1	chr11:73359396-73360171	HepG2	liver:	n/a	n/a
8	CEBPD	chr11:73359674-73360104	HepG2	liver:	n/a	n/a
9	HEY1	chr11:73359858-73360132	HepG2	liver:	n/a	n/a
10	HDAC2	chr11:73359688-73360300	HepG2	liver:	n/a	chr11:73360001-73360020
11	EP300	chr11:73359650-73360182	HepG2	liver:	n/a	chr11:73360016-73360032
12	ELF1	chr11:73359772-73360195	HepG2	liver:	n/a	n/a
13	EBF1	chr11:73359857-73360039	GM12878	blood:	n/a	chr11:73360004-73360015 chr11:73359977-73359986 chr11:73359977-73359986 chr11:73360006-73360015 chr11:73359975-73359986 chr11:73359975-73359988 chr11:73359976-73359986
14	FOXA2	chr11:73359718-73360083	HepG2	liver:	n/a	n/a
15	POLR2A	chr11:73359761-73360103	HepG2	liver:	n/a	n/a
16	POLR2A	chr11:73359443-73360194	HepG2	liver:	n/a	n/a
17	FOXA1	chr11:73359727-73360173	HepG2	liver:	n/a	n/a
18	YY1	chr11:73359707-73360229	HepG2	liver:	n/a	n/a
19	POLR2A	chr11:73359836-73360130	HepG2	liver:	n/a	n/a
20	YY1	chr11:73359632-73359984	HepG2	liver:	n/a	n/a
21	MAZ	chr11:73359781-73359985	HepG2	liver:	n/a	n/a
22	POLR2A	chr11:73359636-73360435	HepG2	liver:	n/a	n/a
23	ZBTB7A	chr11:73359738-73360034	HepG2	liver:	n/a	n/a
24	TAF1	chr11:73359683-73360118	HepG2	liver:	n/a	n/a
25	SP1	chr11:73359711-73360055	HepG2	liver:	n/a	n/a
26	FOXA2	chr11:73359408-73360352	HepG2	liver:	n/a	n/a
27	FOXA1	chr11:73359772-73360231	HepG2	liver:	n/a	n/a
28	POLR2A	chr11:73359769-73360546	K562	blood:	n/a	n/a
29	ZNF263	chr11:73359516-73360064	HEK293-T-REx	kidney:	n/a	chr11:73359912-73359921 chr11:73359699-73359708
30	YY1	chr11:73359626-73360080	H1-hESC	embryonic stem cell:	n/a	n/a
31	TBP	chr11:73359689-73359985	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73350129..73352943-chr11:73358005..73360556,2	MCF-7	breast:

Variant related genes	Relation type
PLEKHB1	TF binding region
ENSG00000270323	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv525173	chr11:73356872-73364673	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv521125	chr11:73359236-73378142	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73356200-73360800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:73356800-73360600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:73357200-73364000	Weak transcription	Liver	Liver
4	chr11:73357800-73364200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:73358200-73361000	Flanking Active TSS	HepG2	liver
6	chr11:73358600-73360000	Active TSS	Brain Substantia Nigra	brain
7	chr11:73358600-73360200	Active TSS	Brain Cingulate Gyrus	brain
8	chr11:73358600-73360400	Active TSS	Brain Angular Gyrus	brain
9	chr11:73358600-73363200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:73358800-73360600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:73359000-73360200	Enhancers	Placenta	Placenta
12	chr11:73359000-73360600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:73359000-73361000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:73359000-73363200	Weak transcription	Right Atrium	heart
15	chr11:73359000-73371600	Weak transcription	Fetal Brain Female	brain
16	chr11:73359000-73371600	Weak transcription	Right Ventricle	heart
17	chr11:73359200-73360000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr11:73359200-73360200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr11:73359200-73360200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:73359200-73360200	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:73359200-73360400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
22	chr11:73359200-73360400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:73359200-73360400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:73359200-73360600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:73359200-73361000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:73359200-73361800	Weak transcription	Primary T cells from cord blood	blood
27	chr11:73359200-73362200	Weak transcription	Fetal Intestine Small	intestine
28	chr11:73359200-73362600	Weak transcription	HMEC	breast
29	chr11:73359200-73362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:73359200-73362800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:73359200-73362800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:73359200-73362800	Weak transcription	Gastric	stomach
33	chr11:73359200-73363000	Weak transcription	Brain Germinal Matrix	brain
34	chr11:73359200-73363200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:73359200-73363200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:73359200-73367200	Weak transcription	Spleen	Spleen
37	chr11:73359200-73371600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:73359200-73371600	Weak transcription	Thymus	Thymus
39	chr11:73359200-73371800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:73359400-73360000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr11:73359400-73360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:73359400-73362600	Weak transcription	Pancreas	Pancrea
43	chr11:73359400-73363000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:73359400-73363400	Weak transcription	Stomach Mucosa	stomach
45	chr11:73359400-73367000	Weak transcription	Lung	lung
46	chr11:73359400-73371800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:73359600-73360000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:73359600-73360200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:73359600-73361600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr11:73359600-73362800	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links