Variant report

Variant	rs150368767
Chromosome Location	chr14:35135779-35135780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35129877..35132741-chr14:35133755..35136058,2	MCF-7	breast:
2	chr14:35120647..35123453-chr14:35134189..35136107,2	MCF-7	breast:
3	chr14:35135275..35136944-chr14:35151040..35152580,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1038360	chr14:35040853-35152886	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv564195	chr14:35107957-35153991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1038792	chr14:35108080-35160860	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1053843	chr14:35110120-35167640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv542028	chr14:35110120-35167640	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1049026	chr14:35110285-35160860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv564196	chr14:35110512-35152084	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv564198	chr14:35118196-35152084	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv542029	chr14:35118620-35152886	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv3308372	chr14:35128027-35136679	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3309373	chr14:35128041-35136675	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv564199	chr14:35135186-35167362	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35133000-35136200	Weak transcription	Placenta	Placenta
2	chr14:35134200-35136000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr14:35134200-35136400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:35134200-35136400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:35134200-35136400	Enhancers	HUVEC	blood vessel
6	chr14:35134200-35136400	Enhancers	NHLF	lung
7	chr14:35134200-35136600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:35134200-35136600	Enhancers	NHDF-Ad	bronchial
9	chr14:35134400-35136000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:35134400-35136200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:35134400-35136400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr14:35134400-35137000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:35134400-35139200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:35134600-35135800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr14:35134600-35136000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr14:35134600-35136000	Enhancers	Hela-S3	cervix
17	chr14:35134600-35136000	Enhancers	Osteobl	bone
18	chr14:35134600-35136400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr14:35134600-35136600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr14:35134600-35137800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:35134800-35135800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:35134800-35136000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:35134800-35136000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr14:35134800-35136000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:35134800-35136400	Enhancers	Primary hematopoietic stem cells	blood
26	chr14:35135000-35135800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:35135000-35135800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:35135000-35135800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr14:35135000-35135800	Enhancers	Fetal Kidney	kidney
30	chr14:35135000-35135800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr14:35135000-35136000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:35135000-35136000	Enhancers	Primary T cells from cord blood	blood
33	chr14:35135000-35136000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr14:35135000-35136000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr14:35135000-35136000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:35135000-35136000	Enhancers	HSMM	muscle
37	chr14:35135000-35136000	Enhancers	NHEK	skin
38	chr14:35135000-35136200	Weak transcription	Fetal Muscle Leg	muscle
39	chr14:35135000-35136200	Enhancers	HMEC	breast
40	chr14:35135200-35135800	Flanking Active TSS	A549	lung
41	chr14:35135200-35136000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr14:35135200-35136000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:35135200-35136000	Enhancers	K562	blood
44	chr14:35135200-35136000	Enhancers	NH-A	brain
45	chr14:35135400-35135800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:35135400-35135800	Enhancers	Dnd41	blood
47	chr14:35135600-35135800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr14:35135600-35136000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:35135600-35137800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:35135600-35140800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links