Variant report

Variant	rs150409285
Chromosome Location	chr2:233927423-233927424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233925658..233927822-chr2:233939006..233941097,2	K562	blood:
2	chr2:233923263..233925665-chr2:233926706..233928390,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168918	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv520361	chr2:233926201-233929545	Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233923000-233927800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:233924400-233928800	Active TSS	Brain Hippocampus Middle	brain
3	chr2:233924600-233928000	Active TSS	Brain Anterior Caudate	brain
4	chr2:233924600-233929200	Active TSS	Rectal Smooth Muscle	rectum
5	chr2:233924800-233927600	Active TSS	Sigmoid Colon	Sigmoid Colon
6	chr2:233924800-233929800	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr2:233925200-233927800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr2:233925200-233930000	Enhancers	Stomach Mucosa	stomach
9	chr2:233925400-233928400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:233925400-233930000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr2:233925600-233928000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:233925800-233928000	Flanking Active TSS	Fetal Thymus	thymus
13	chr2:233925800-233928200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:233925800-233928400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:233925800-233929000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr2:233926000-233928200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr2:233926000-233929200	Flanking Active TSS	HepG2	liver
18	chr2:233926200-233927600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr2:233926200-233928200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:233926200-233928400	Flanking Active TSS	Thymus	Thymus
21	chr2:233926200-233928800	Enhancers	Fetal Intestine Large	intestine
22	chr2:233926200-233929200	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr2:233926200-233929800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr2:233926400-233927600	Active TSS	Colonic Mucosa	Colon
25	chr2:233926400-233927600	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr2:233926400-233928800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
27	chr2:233926400-233928800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr2:233926400-233928800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:233926400-233929000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr2:233926400-233929800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
31	chr2:233926600-233927600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr2:233926600-233927800	Enhancers	Fetal Lung	lung
33	chr2:233926600-233930000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:233926800-233927800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr2:233926800-233928000	Weak transcription	Psoas Muscle	Psoas
36	chr2:233926800-233928400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr2:233926800-233928400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr2:233926800-233928800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr2:233926800-233929000	Enhancers	Gastric	stomach
40	chr2:233926800-233929800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
41	chr2:233926800-233931000	Weak transcription	Pancreas	Pancrea
42	chr2:233926800-233931800	Weak transcription	K562	blood
43	chr2:233927000-233927600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr2:233927000-233927600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr2:233927000-233928400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr2:233927000-233929400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr2:233927200-233927600	Transcr. at gene 5' and 3'	Dnd41	blood
48	chr2:233927200-233928000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr2:233927200-233928200	Enhancers	Right Ventricle	heart
50	chr2:233927200-233928400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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